Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   WHK83_RS02420 Genome accession   NZ_CP150097
Coordinates   503732..504616 (+) Length   294 a.a.
NCBI ID   WP_043960327.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain HAU425     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 498732..509616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHK83_RS02395 - 499130..500377 (-) 1248 WP_000893466.1 YihY family inner membrane protein -
  WHK83_RS02400 wrbA 500665..501258 (+) 594 WP_001183355.1 NAD(P)H:quinone oxidoreductase -
  WHK83_RS02405 - 501311..501886 (-) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  WHK83_RS02410 - 501959..502672 (-) 714 WP_000201544.1 DUF3108 domain-containing protein -
  WHK83_RS02415 - 502830..503501 (-) 672 WP_001193960.1 hypothetical protein -
  WHK83_RS02420 tonB2 503732..504616 (+) 885 WP_043960327.1 energy transducer TonB Machinery gene
  WHK83_RS02425 ybeY 504706..505182 (-) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  WHK83_RS02430 - 505192..506280 (-) 1089 WP_000122983.1 PhoH family protein -
  WHK83_RS02435 miaB 506318..507769 (-) 1452 WP_049081790.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33729.63 Da        Isoelectric Point: 9.0935

>NTDB_id=962832 WHK83_RS02420 WP_043960327.1 503732..504616(+) (tonB2) [Acinetobacter baumannii strain HAU425]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFMLLIHFAMPTPSEQSTKEIAISIRPNEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPAPMPSDASTGEAQLETLEKMQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=962832 WHK83_RS02420 WP_043960327.1 503732..504616(+) (tonB2) [Acinetobacter baumannii strain HAU425]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTATGTTGCTCATCCATTTTGCGATGCCTACGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTAATGAAGATGTGATCAAACATGCAGACTTTTTAGCTCAAGCCGATCAACAAGGTTCAGGGGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAATGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCAGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

98.639

100

0.986