Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ACJEID_RS02380 Genome accession   NZ_CP174218
Coordinates   517198..518592 (-) Length   464 a.a.
NCBI ID   WP_014326638.1    Uniprot ID   -
Organism   Legionella pneumophila strain SPF650     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 512198..523592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJEID_RS02345 (ACJEID_02345) - 512258..513268 (-) 1011 WP_010946219.1 class I fructose-bisphosphate aldolase -
  ACJEID_RS02350 (ACJEID_02350) - 513418..514152 (-) 735 WP_016356729.1 ferredoxin--NADP reductase -
  ACJEID_RS02355 (ACJEID_02355) dotV 514236..514776 (+) 541 Protein_458 type IV secretion system protein DotV -
  ACJEID_RS02360 (ACJEID_02360) - 514920..515204 (-) 285 WP_011945638.1 DUF3579 domain-containing protein -
  ACJEID_RS02365 (ACJEID_02365) pssA 515434..516171 (+) 738 WP_015444818.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  ACJEID_RS02370 (ACJEID_02370) - 516412..516681 (-) 270 WP_010946224.1 HPr family phosphocarrier protein -
  ACJEID_RS02375 (ACJEID_02375) hpf 516872..517171 (-) 300 WP_010946225.1 ribosome hibernation promoting factor -
  ACJEID_RS02380 (ACJEID_02380) rpoN/rpoN1 517198..518592 (-) 1395 WP_014326638.1 RNA polymerase factor sigma-54 Machinery gene
  ACJEID_RS02385 (ACJEID_02385) rpmG 518802..518966 (-) 165 WP_003635328.1 50S ribosomal protein L33 -
  ACJEID_RS02390 (ACJEID_02390) rpmB 518981..519217 (-) 237 WP_010946227.1 50S ribosomal protein L28 -
  ACJEID_RS02395 (ACJEID_02395) trmB 519486..520163 (+) 678 WP_015444815.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ACJEID_RS02400 (ACJEID_02400) - 520175..521299 (+) 1125 WP_015444814.1 M42 family metallopeptidase -
  ACJEID_RS02405 (ACJEID_02405) ankC 521377..522864 (+) 1488 WP_010946231.1 Dot/Icm T4SS effector AnkC/LegA12 -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52953.25 Da        Isoelectric Point: 5.4456

>NTDB_id=962673 ACJEID_RS02380 WP_014326638.1 517198..518592(-) (rpoN/rpoN1) [Legionella pneumophila strain SPF650]
MKPTLQIGIGQHLTLTPQLQQAIRLLQLSTFDLQQEIQLVVESNPLLEATPVEEKEDAQINTNQNHDEYSDFQWSQLYNN
LNKRNNFEENDYNFDNLHCTTTNLQDHLNWQLDLTPMSDIDRVIATTIIDAINDDGFLTIPVAEIHASLNSDDFPLDIEE
IEAVRHRLQLFDPVGCASVNLAETLVLQLEQLPLEPKLLATAKKVILEDIELLGQHNYRQLMKNHQISEKTIHEILQVIH
KLNPKPGSLIHQDNIEYVIPDLTVKKIDNQWKVFLNQDILPRLSINSQYAALIQRANNSLDNQFLKHNLQEARWFLKSIQ
SRQETLLKVATCIMEYQHGFLEFGEEAMKPLILNDVASALDMHESTVSRVTTQKFINTPRGVFELKYFFSSHVNTDSGGE
CSSTAIRAVIKKLISAENRKKPLSDSKIAQLIGEQGIKVARRTVAKYREAMGIPPSNERKVISS

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=962673 ACJEID_RS02380 WP_014326638.1 517198..518592(-) (rpoN/rpoN1) [Legionella pneumophila strain SPF650]
ATGAAACCGACATTGCAGATTGGTATTGGTCAACATCTCACGTTAACCCCACAACTGCAACAAGCCATAAGACTGCTGCA
ATTATCCACCTTTGATTTACAACAAGAAATTCAACTCGTTGTTGAATCAAATCCTTTGCTTGAAGCCACTCCTGTTGAAG
AAAAAGAAGACGCCCAAATAAATACTAATCAGAACCATGATGAATATTCAGATTTTCAATGGTCGCAACTGTATAATAAC
TTAAACAAGCGCAATAATTTTGAAGAAAACGATTACAATTTCGATAATTTACACTGCACTACCACCAATTTACAAGATCA
TCTTAACTGGCAACTTGACCTGACGCCTATGAGCGATATTGACCGAGTCATTGCTACAACAATTATTGATGCGATAAACG
ATGACGGCTTTTTAACTATACCCGTTGCTGAAATTCACGCCAGCTTAAATAGCGATGATTTCCCTCTGGATATAGAAGAA
ATAGAAGCAGTGAGACACAGGCTTCAATTATTTGACCCCGTAGGATGCGCATCTGTTAATTTAGCAGAAACACTCGTTTT
GCAATTGGAACAACTTCCACTGGAACCCAAGCTTTTGGCTACTGCCAAGAAAGTCATTCTTGAAGACATTGAGTTGCTAG
GGCAACATAACTACAGACAACTCATGAAAAATCATCAAATAAGTGAAAAAACAATTCATGAAATATTACAAGTCATTCAT
AAATTAAATCCAAAACCAGGAAGTTTGATCCATCAAGATAATATTGAATATGTTATTCCCGACTTGACTGTTAAAAAGAT
AGATAATCAATGGAAAGTTTTTTTGAATCAAGATATTCTTCCCAGGCTGAGTATCAATAGCCAATATGCCGCTTTAATCC
AACGCGCAAACAATAGTCTGGATAATCAATTCTTAAAGCATAATTTGCAAGAAGCACGTTGGTTTTTAAAAAGCATTCAA
AGCCGTCAGGAAACACTTCTAAAAGTAGCAACCTGTATCATGGAATACCAACATGGATTTCTGGAATTTGGTGAAGAAGC
GATGAAACCATTAATATTGAATGATGTAGCTTCTGCCTTGGATATGCATGAATCAACGGTATCAAGAGTTACAACTCAAA
AATTTATTAACACTCCTCGAGGTGTTTTTGAGTTAAAGTACTTCTTCTCCAGCCATGTCAATACTGATAGCGGAGGAGAA
TGCTCTTCCACCGCAATCCGAGCGGTAATAAAAAAATTAATTTCAGCAGAGAATAGAAAAAAACCTTTGAGTGATAGTAA
AATTGCCCAACTAATAGGTGAGCAAGGCATTAAAGTAGCAAGACGTACTGTTGCCAAATATCGCGAAGCAATGGGGATTC
CCCCATCCAATGAAAGAAAGGTTATTAGTAGTTAA

Domains

Predicted by InterProScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(95-289)

Sigma-54, DNA binding domain (Sigma54_DBD)

(303-460)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

39.087

100

0.425