Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WKR14_RS19120 Genome accession   NZ_CP149966
Coordinates   4264808..4266328 (+) Length   506 a.a.
NCBI ID   WP_109247176.1    Uniprot ID   A0A6G7LWT8
Organism   Shewanella chilikensis strain ST10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4259808..4271328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKR14_RS19095 (WKR14_19095) - 4260750..4260998 (-) 249 WP_101056455.1 hypothetical protein -
  WKR14_RS19100 (WKR14_19100) - 4261139..4261957 (-) 819 WP_335921722.1 EAL domain-containing protein -
  WKR14_RS19105 (WKR14_19105) - 4262268..4262828 (+) 561 WP_339087099.1 winged helix-turn-helix domain-containing protein -
  WKR14_RS19110 (WKR14_19110) - 4262919..4263869 (+) 951 WP_001107060.1 IS30 family transposase -
  WKR14_RS19115 (WKR14_19115) - 4264161..4264661 (+) 501 WP_101056458.1 hypothetical protein -
  WKR14_RS19120 (WKR14_19120) comM 4264808..4266328 (+) 1521 WP_109247176.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WKR14_RS19125 (WKR14_19125) - 4266502..4266870 (+) 369 WP_051541835.1 hypothetical protein -
  WKR14_RS19130 (WKR14_19130) caiA 4266957..4268093 (-) 1137 WP_165565794.1 crotonobetainyl-CoA dehydrogenase -
  WKR14_RS19135 (WKR14_19135) - 4268442..4269089 (+) 648 WP_101056462.1 MBL fold metallo-hydrolase -
  WKR14_RS19140 (WKR14_19140) - 4269166..4270485 (-) 1320 WP_109247174.1 MFS transporter -
  WKR14_RS19145 (WKR14_19145) - 4270838..4271125 (-) 288 WP_025010089.1 4Fe-4S dicluster domain-containing protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54427.87 Da        Isoelectric Point: 8.4927

>NTDB_id=962402 WKR14_RS19120 WP_109247176.1 4264808..4266328(+) (comM) [Shewanella chilikensis strain ST10]
MPIARVATRAAKGVEAPQVLVEAHLSNGLPAFNLVGLPEASVKEARERVRSAIINAGFEFPMRRITINLAPADLPKQGGR
YDLPIAIGILAASGQLPLKSLDEHEFVGELGLSGEVRHCTGILPVIIAARQRGIKLVLPQDNRSEADLVGYQQCCLAQHL
QHIAAYLHGQQTLPGIVPGTEWLEQSKPHSSDCLSEVIGQYQAKQALEIAAAGGHNLLMLGPPGTGKTMLASRIISLLPP
MSYEEALEVAAIHSVAGMATEPGEFYRRPFRAPHHTSSAISLVGGGSIPKPGEISLAHLGVLFLDEIAEFPRKVLDCLRE
PMETGHVIISRAAAKLRFDARFQLIAAMNPSPCGDAGPGSRASPEQIRRYLARLSGPFIDRFDLTIEVPKLPPGALTSEA
AQGETSEQIAARVAAARELQLSRAGVLNSQLGSKALKQAGFKPGDLAFLEQSVNQLGLSVRSFHRLQRVARTIADLQLSP
MVERRHLAQALGYRAMDRLLASLQQL

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=962402 WKR14_RS19120 WP_109247176.1 4264808..4266328(+) (comM) [Shewanella chilikensis strain ST10]
ATGCCCATAGCCAGAGTTGCCACCCGAGCCGCCAAAGGTGTGGAGGCGCCTCAAGTACTGGTCGAAGCTCACCTCTCCAA
CGGCCTGCCGGCCTTCAATCTGGTGGGGTTGCCGGAAGCTTCGGTCAAGGAAGCCAGAGAAAGGGTTCGCAGCGCCATAA
TCAATGCGGGTTTTGAGTTCCCTATGCGCAGGATAACCATCAATCTGGCACCGGCCGATCTGCCCAAGCAGGGTGGACGT
TACGACCTTCCTATTGCCATTGGCATCCTGGCAGCATCCGGACAGCTGCCACTGAAATCCCTGGACGAGCATGAATTTGT
CGGTGAGCTTGGGCTGTCCGGTGAGGTCAGGCACTGCACTGGGATCCTGCCGGTGATCATTGCCGCCCGTCAAAGAGGTA
TCAAACTGGTATTGCCACAGGATAACCGTAGTGAGGCGGATTTGGTGGGCTATCAACAGTGTTGCCTGGCCCAGCACCTG
CAACATATTGCCGCCTATCTGCACGGGCAGCAAACCCTGCCGGGGATAGTGCCGGGAACCGAATGGCTGGAACAATCCAA
GCCACACTCAAGTGACTGCCTGTCGGAAGTCATAGGCCAATATCAAGCCAAACAAGCACTGGAAATCGCGGCAGCCGGCG
GGCATAACCTGCTGATGCTGGGGCCACCTGGTACAGGCAAAACCATGCTGGCCAGCCGGATAATCTCACTCCTGCCTCCC
ATGAGTTATGAAGAGGCGCTGGAAGTGGCGGCAATTCATTCAGTGGCCGGCATGGCCACTGAGCCGGGGGAATTTTATCG
CCGCCCGTTTCGCGCTCCGCACCATACCAGCTCGGCCATCTCTTTAGTGGGTGGCGGCTCGATTCCCAAACCCGGCGAGA
TTTCGCTGGCTCACCTTGGGGTGCTGTTTCTCGATGAAATTGCCGAGTTTCCCCGCAAGGTACTCGACTGCCTGCGTGAA
CCCATGGAAACCGGCCATGTCATCATCTCCCGCGCCGCAGCCAAACTGCGCTTCGATGCCCGTTTTCAACTTATCGCCGC
CATGAACCCCAGCCCCTGTGGTGATGCAGGCCCAGGAAGCCGCGCCAGCCCAGAGCAGATCCGCCGTTACCTGGCCCGGC
TGTCTGGCCCTTTCATTGACAGATTCGACCTCACCATAGAGGTGCCCAAACTCCCGCCAGGCGCCTTGACCTCAGAGGCG
GCGCAGGGTGAAACCAGTGAGCAGATTGCCGCCAGAGTCGCTGCGGCCAGGGAGCTGCAACTCAGCCGCGCCGGCGTACT
CAATAGTCAGTTGGGCAGTAAGGCATTGAAGCAGGCAGGTTTCAAACCCGGCGATCTGGCGTTTCTCGAACAGAGTGTCA
ATCAGCTGGGATTATCAGTGCGCAGCTTTCATCGGCTGCAACGAGTGGCGCGCACCATAGCCGATCTGCAGCTCAGCCCC
ATGGTCGAGCGGCGCCATCTGGCTCAGGCCCTGGGTTATCGGGCGATGGACCGTTTGCTGGCCAGCCTGCAACAGCTTTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7LWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.819

100

0.559
  comM Haemophilus influenzae Rd KW20

55.078

100

0.557
  comM Vibrio campbellii strain DS40M4

55.227

100

0.553
  comM Glaesserella parasuis strain SC1401

54.832

100

0.549
  comM Legionella pneumophila str. Paris

48.096

98.617

0.474
  comM Legionella pneumophila strain ERS1305867

48.096

98.617

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.281

100

0.433