Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   WKQ99_RS02780 Genome accession   NZ_CP149965
Coordinates   593632..594036 (+) Length   134 a.a.
NCBI ID   WP_016772743.1    Uniprot ID   A0AAU7ESX1
Organism   Pseudomonas atacamensis strain EMP42     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 588632..599036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKQ99_RS02755 (WKQ99_02755) pyrR 589533..590039 (-) 507 WP_024014655.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  WKQ99_RS02760 (WKQ99_02760) ruvX 590121..590558 (-) 438 WP_016772738.1 Holliday junction resolvase RuvX -
  WKQ99_RS02765 (WKQ99_02765) - 590558..591130 (-) 573 WP_150636915.1 YqgE/AlgH family protein -
  WKQ99_RS02770 (WKQ99_02770) - 591428..592327 (-) 900 WP_024014654.1 energy transducer TonB -
  WKQ99_RS02775 (WKQ99_02775) gshB 592435..593406 (-) 972 WP_110644425.1 glutathione synthase -
  WKQ99_RS02780 (WKQ99_02780) pilG 593632..594036 (+) 405 WP_016772743.1 twitching motility response regulator PilG Regulator
  WKQ99_RS02785 (WKQ99_02785) pilH 594097..594462 (+) 366 WP_339100927.1 twitching motility response regulator PilH -
  WKQ99_RS02790 (WKQ99_02790) - 594473..595012 (+) 540 WP_016772745.1 chemotaxis protein CheW -
  WKQ99_RS02795 (WKQ99_02795) - 595222..597270 (+) 2049 WP_016772746.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14616.03 Da        Isoelectric Point: 7.2443

>NTDB_id=962361 WKQ99_RS02780 WP_016772743.1 593632..594036(+) (pilG) [Pseudomonas atacamensis strain EMP42]
MEQQSSALKVMVIDDSKTIRRTAETLLKNVGCEVITAIDGFDALAKIADHHPGIIFVDIMMPRLDGYQTCALIKNNSAFK
ATPVIMLSSRDGLFDKAKGRIVGSDQFLTKPFSKEELLNAIQAHVPGFAAVLPQ

Nucleotide


Download         Length: 405 bp        

>NTDB_id=962361 WKQ99_RS02780 WP_016772743.1 593632..594036(+) (pilG) [Pseudomonas atacamensis strain EMP42]
ATGGAACAGCAGTCCAGCGCCTTGAAGGTCATGGTGATCGACGACTCGAAAACGATTCGCCGCACCGCCGAAACATTGTT
GAAGAATGTCGGTTGCGAAGTGATCACCGCCATCGACGGTTTCGATGCGCTGGCGAAGATCGCCGACCACCATCCCGGGA
TCATCTTCGTCGACATCATGATGCCGCGTCTGGACGGTTATCAGACCTGCGCCCTGATCAAGAACAACAGCGCCTTCAAG
GCGACGCCGGTGATCATGCTTTCATCCAGGGACGGGTTGTTCGACAAGGCCAAGGGGCGGATTGTCGGCTCTGATCAATT
TCTGACCAAGCCGTTCAGCAAAGAAGAACTGCTCAACGCGATCCAGGCCCATGTTCCGGGCTTCGCCGCCGTTTTGCCGC
AGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.2

93.284

0.701