Detailed information NTG0962278

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACJEH4_RS06220
• Genome accession: NZ_CP174212
• Coordinates: 1379931..1380956 (+)
• Length: 341 a.a.
• NCBI ID: WP_015444568.1
• Uniprot ID: Q9S4T1
• Organism: Legionella pneumophila strain SPF658
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1374931..1385956

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJEH4_RS06190 (ACJEH4_06190)	-	1375365..1375682 (+)	318	WP_010947009.1	DUF2845 domain-containing protein	-
ACJEH4_RS06195 (ACJEH4_06195)	-	1375719..1376090 (+)	372	WP_010947010.1	protease inhibitor I42 family protein	-
ACJEH4_RS06200 (ACJEH4_06200)	-	1376138..1377862 (-)	1725	WP_010947011.1	NAD-dependent malic enzyme	-
ACJEH4_RS06205 (ACJEH4_06205)	-	1377942..1378325 (+)	384	WP_010947012.1	hypothetical protein	-
ACJEH4_RS06210 (ACJEH4_06210)	surE	1378328..1379083 (+)	756	WP_010947013.1	5'/3'-nucleotidase SurE	-
ACJEH4_RS06215 (ACJEH4_06215)	-	1379102..1379845 (+)	744	WP_010947014.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACJEH4_RS06220 (ACJEH4_06220)	rpoS	1379931..1380956 (+)	1026	WP_015444568.1	RNA polymerase sigma factor RpoS	Regulator
ACJEH4_RS06225 (ACJEH4_06225)	hmgA	1381059..1382309 (-)	1251	WP_010947016.1	homogentisate 1,2-dioxygenase	-
ACJEH4_RS06230 (ACJEH4_06230)	-	1382455..1383198 (+)	744	WP_010947017.1	YebC/PmpR family DNA-binding transcriptional regulator	-
ACJEH4_RS06235 (ACJEH4_06235)	ruvC	1383198..1383722 (+)	525	WP_010947018.1	crossover junction endodeoxyribonuclease RuvC	-
ACJEH4_RS06240 (ACJEH4_06240)	ruvA	1383719..1384318 (+)	600	WP_010947019.1	Holliday junction branch migration protein RuvA	-
ACJEH4_RS06245 (ACJEH4_06245)	-	1384368..1384688 (+)	321	WP_010947020.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39449.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=962278 ACJEH4_RS06220 WP_015444568.1 1379931..1380956(+) (rpoS) [Legionella pneumophila strain SPF658]
MQDDEEPIKDKEFKEEEWSEPDDESLLSEEDVEPDIEKMEEELDELPEFTDDETFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=962278 ACJEH4_RS06220 WP_015444568.1 1379931..1380956(+) (rpoS) [Legionella pneumophila strain SPF658]
ATGCAAGATGATGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGAATCTCTGTT
GTCAGAAGAAGATGTTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAA
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGTTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTGCCTCTTCTTGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGTTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCGGCAAGGCAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTCGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCGTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

3D structure

• AlphaFold DB: Q9S4T1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548