Detailed information NTG0962209

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACJEII_RS06220
• Genome accession: NZ_CP174211
• Coordinates: 1369728..1370753 (+)
• Length: 341 a.a.
• NCBI ID: WP_015444568.1
• Uniprot ID: Q9S4T1
• Organism: Legionella pneumophila strain SPF664
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1364728..1375753

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJEII_RS06190 (ACJEII_06190)	-	1365162..1365479 (+)	318	WP_010947009.1	DUF2845 domain-containing protein	-
ACJEII_RS06195 (ACJEII_06195)	-	1365516..1365887 (+)	372	WP_010947010.1	protease inhibitor I42 family protein	-
ACJEII_RS06200 (ACJEII_06200)	-	1365935..1367659 (-)	1725	WP_010947011.1	NAD-dependent malic enzyme	-
ACJEII_RS06205 (ACJEII_06205)	-	1367739..1368122 (+)	384	WP_010947012.1	hypothetical protein	-
ACJEII_RS06210 (ACJEII_06210)	surE	1368125..1368880 (+)	756	WP_010947013.1	5'/3'-nucleotidase SurE	-
ACJEII_RS06215 (ACJEII_06215)	-	1368899..1369633 (+)	735	WP_408069185.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACJEII_RS06220 (ACJEII_06220)	rpoS	1369728..1370753 (+)	1026	WP_015444568.1	RNA polymerase sigma factor RpoS	Regulator
ACJEII_RS06225 (ACJEII_06225)	hmgA	1370856..1372106 (-)	1251	WP_010947016.1	homogentisate 1,2-dioxygenase	-
ACJEII_RS06230 (ACJEII_06230)	-	1372252..1372995 (+)	744	WP_010947017.1	YebC/PmpR family DNA-binding transcriptional regulator	-
ACJEII_RS06235 (ACJEII_06235)	ruvC	1372995..1373519 (+)	525	WP_010947018.1	crossover junction endodeoxyribonuclease RuvC	-
ACJEII_RS06240 (ACJEII_06240)	ruvA	1373516..1374115 (+)	600	WP_010947019.1	Holliday junction branch migration protein RuvA	-
ACJEII_RS06245 (ACJEII_06245)	-	1374165..1374485 (+)	321	WP_010947020.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39449.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=962209 ACJEII_RS06220 WP_015444568.1 1369728..1370753(+) (rpoS) [Legionella pneumophila strain SPF664]
MQDDEEPIKDKEFKEEEWSEPDDESLLSEEDVEPDIEKMEEELDELPEFTDDETFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=962209 ACJEII_RS06220 WP_015444568.1 1369728..1370753(+) (rpoS) [Legionella pneumophila strain SPF664]
ATGCAAGATGATGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGAATCTCTGTT
GTCAGAAGAAGATGTTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAA
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGTTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTGCCTCTTCTTGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGTTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCGGCAAGGCAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTCGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCGTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

3D structure

• AlphaFold DB: Q9S4T1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548