Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   OCX50_RS01930 Genome accession   NZ_AP026403
Coordinates   392398..393837 (+) Length   479 a.a.
NCBI ID   WP_041211850.1    Uniprot ID   A0A2L0TRY9
Organism   Aeromonas caviae strain KAM643     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 387398..398837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX50_RS01900 (KAM643c_03630) mlaF 387976..388776 (-) 801 WP_029314846.1 phospholipid ABC transporter ATP-binding protein MlaF -
  OCX50_RS01905 (KAM643c_03640) - 388983..389978 (+) 996 WP_029314845.1 KpsF/GutQ family sugar-phosphate isomerase -
  OCX50_RS01910 (KAM643c_03650) kdsC 389978..390532 (+) 555 WP_049637178.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  OCX50_RS01915 (KAM643c_03660) lptC 390529..391089 (+) 561 WP_039040473.1 LPS export ABC transporter periplasmic protein LptC -
  OCX50_RS01920 (KAM643c_03670) lptA 391076..391594 (+) 519 WP_010675873.1 lipopolysaccharide transport periplasmic protein LptA -
  OCX50_RS01925 (KAM643c_03680) lptB 391607..392332 (+) 726 WP_010675872.1 LPS export ABC transporter ATP-binding protein -
  OCX50_RS01930 (KAM643c_03690) rpoN/rpoN1 392398..393837 (+) 1440 WP_041211850.1 RNA polymerase factor sigma-54 Machinery gene
  OCX50_RS01935 (KAM643c_03700) hpf 393858..394145 (+) 288 WP_005305957.1 ribosome hibernation promoting factor -
  OCX50_RS01940 (KAM643c_03710) ptsN 394148..394594 (+) 447 WP_010675870.1 PTS IIA-like nitrogen regulatory protein PtsN -
  OCX50_RS01945 (KAM643c_03720) rapZ 394635..395501 (+) 867 WP_010675869.1 RNase adapter RapZ -
  OCX50_RS01950 (KAM643c_03730) npr 395522..395794 (+) 273 WP_010675868.1 PTS phosphocarrier protein NPr -
  OCX50_RS01955 (KAM643c_03740) - 395810..397714 (-) 1905 WP_049637179.1 transcription antiterminator -
  OCX50_RS01960 (KAM643c_03750) - 397817..398557 (-) 741 WP_049637180.1 KDGP aldolase family protein -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53731.54 Da        Isoelectric Point: 4.3728

>NTDB_id=96217 OCX50_RS01930 WP_041211850.1 392398..393837(+) (rpoN/rpoN1) [Aeromonas caviae strain KAM643]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEAQETSQAETQDASQLDSSDAMAQESMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTATLED
IQAAVSSEEVEVELDEIEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLDEAREVIREHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=96217 OCX50_RS01930 WP_041211850.1 392398..393837(+) (rpoN/rpoN1) [Aeromonas caviae strain KAM643]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAGAACGAGG
CGCAGGAAACCAGTCAGGCAGAGACACAGGACGCCAGTCAACTCGACTCCAGCGATGCCATGGCCCAGGAGAGCATGCCG
GATGAACTGCCGGTGGACACCACCTGGGACGAGGTCTACTCGGCCGGTACGGCCCAGAGTGCAGGCCCCATCCATGACGG
GGAAGACAGCGTCTATCAGGGGGAGACCACCGAGAACCTGCAAGACTACCTGCTGTGGCAGATGCGGCTCACCCCGTTCA
GTGATGTGGATGCGGCCATCGCCCTTGCCATCATCGATGCCATCGACGAATCCGGGTATCTGACTGCCACCCTCGAGGAT
ATTCAGGCTGCAGTCAGCAGCGAGGAGGTAGAAGTCGAACTGGATGAGATCGAAGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGTTCGGTGCAAGAGTGTCTGCTGATCCAGCTCGGCCAGTATTCGCCGGACCTGCCCT
GGCTCGACGAAGCCAGAGAGGTGATCCGCGAACACATGGACCTGCTCGGCAATCGCGACTACCGCACCCTGGCTCGCAAG
ACCCGCCTCAAGGAGAGCGATCTCAAGGAGGTGCTGGATCTCATCCAGCAACTGGAGCCCAGACCCGGCAACGGCATCAT
CCAGAGTGAATCCCAGTACGTGATCCCGGATGTGTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTTGAACTCAATCCGG
ATTCTGCTCCGCGCATCCGTGTCAACGAGGCCTATGCGGCCATGGCGCGCAATGCCCGCAGCAGCACGGATACCCAGTTC
ATCCGTTCTCATTTGCAGGAGGCCAAGTGGTTCATCAAGAGCCTGGAGAGTCGTAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTTTTCGAGTACGGCGAAGAGGCCATGAAACCCATGGTACTCAACGACATCGCGG
AAGCGGTGGAGATGCATGAGTCGACCATTTCACGGGTCACGACCCAGAAGTACATGCATACGCCCCGCGGCATTTTTGAA
CTGAAGTTTTTTTTCTCCAGTCACGTCAATACGGAGGGAGGAGGAGAGTGCTCATCGACCGCTATTCGCGCCCTGATCAA
GAAGCTGGTGACGGCGGAAAACCCCGCCAAGCCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0TRY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.472

100

0.482

Multiple sequence alignment