Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AABJ45_RS07620 Genome accession   NZ_AP028611
Coordinates   1498846..1499568 (-) Length   240 a.a.
NCBI ID   WP_001833285.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Sep6     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1493846..1504568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ45_RS07610 (TKY121527_15230) - 1496420..1497586 (-) 1167 WP_000521384.1 MalY/PatB family protein -
  AABJ45_RS07615 (TKY121527_15240) - 1497594..1498688 (-) 1095 WP_000031963.1 cystathionine gamma-synthase -
  AABJ45_RS07620 rcrP 1498846..1499568 (-) 723 WP_001833285.1 ATP-binding cassette domain-containing protein Regulator
  AABJ45_RS07625 (TKY121527_15260) - 1499755..1500521 (-) 767 Protein_1509 ABC transporter transmembrane domain-containing protein -
  AABJ45_RS07630 (TKY121527_15270) amiA 1500693..1502651 (-) 1959 WP_000748873.1 peptide ABC transporter substrate-binding protein Regulator
  AABJ45_RS07635 (TKY121527_15280) - 1502854..1504476 (-) 1623 WP_000017791.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27166.04 Da        Isoelectric Point: 5.2119

>NTDB_id=96211 AABJ45_RS07620 WP_001833285.1 1498846..1499568(-) (rcrP) [Streptococcus pneumoniae strain Sep6]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRLLSGGRSQRLQIARAYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHRLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=96211 AABJ45_RS07620 WP_001833285.1 1498846..1499568(-) (rcrP) [Streptococcus pneumoniae strain Sep6]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGACTCTTGTCAGGGGGGCGAAGCCAAAGACTTCAAATAGCTAGAGCCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTACTAAAGGA
GAAGACGGTTGTGATTATAGCGCATCGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.82

99.583

0.367
  rcrQ Streptococcus mutans UA159

36.25

100

0.363
  comA Streptococcus mitis SK321

37.179

97.5

0.362