Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   WGQ49_RS03330 Genome accession   NZ_CP149886
Coordinates   638191..638628 (+) Length   145 a.a.
NCBI ID   WP_270989794.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NPRC(S) 01.13897     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 633191..643628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WGQ49_RS03310 (WGQ49_03310) kdpD 633683..635503 (+) 1821 WP_002858538.1 sensor histidine kinase KdpD -
  WGQ49_RS03315 (WGQ49_03315) uvrB 635605..637578 (-) 1974 WP_002855027.1 excinuclease ABC subunit UvrB -
  WGQ49_RS03320 (WGQ49_03320) - 637732..637962 (+) 231 WP_002852327.1 hypothetical protein -
  WGQ49_RS03325 (WGQ49_03325) - 637952..638194 (+) 243 WP_002854947.1 hypothetical protein -
  WGQ49_RS03330 (WGQ49_03330) Cj0683 638191..638628 (+) 438 WP_270989794.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WGQ49_RS03335 (WGQ49_03335) priA 638610..640463 (+) 1854 WP_002852169.1 primosomal protein N' -
  WGQ49_RS03340 (WGQ49_03340) cipA 640473..641867 (-) 1395 WP_002860010.1 DUF2972 domain-containing protein -
  WGQ49_RS03345 (WGQ49_03345) ispG 642013..643086 (+) 1074 WP_002852250.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16791.80 Da        Isoelectric Point: 8.0853

>NTDB_id=962072 WGQ49_RS03330 WP_270989794.1 638191..638628(+) (Cj0683) [Campylobacter jejuni strain NPRC(S) 01.13897]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNYYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=962072 WGQ49_RS03330 WP_270989794.1 638191..638628(+) (Cj0683) [Campylobacter jejuni strain NPRC(S) 01.13897]
ATGAACAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATTACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.31

100

0.993