Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   WGQ50_RS07085 Genome accession   NZ_CP149884
Coordinates   1388273..1388584 (-) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   A0A3K5JRX6
Organism   Campylobacter coli strain NPRC(S) 01.13898     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1383273..1393584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WGQ50_RS07065 (WGQ50_07065) ctsE 1384149..1385711 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  WGQ50_RS07070 (WGQ50_07070) - 1385704..1386291 (-) 588 WP_002810825.1 CDC27 family protein -
  WGQ50_RS07075 (WGQ50_07075) ctsP 1386288..1386884 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  WGQ50_RS07080 (WGQ50_07080) ctsD 1386877..1388295 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WGQ50_RS07085 (WGQ50_07085) ctsR 1388273..1388584 (-) 312 WP_002779316.1 hypothetical protein Machinery gene
  WGQ50_RS07090 (WGQ50_07090) nifJ 1388608..1392168 (-) 3561 WP_002779317.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  WGQ50_RS07095 (WGQ50_07095) - 1392272..1392355 (-) 84 Protein_1373 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=962060 WGQ50_RS07085 WP_002779316.1 1388273..1388584(-) (ctsR) [Campylobacter coli strain NPRC(S) 01.13898]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=962060 WGQ50_RS07085 WP_002779316.1 1388273..1388584(-) (ctsR) [Campylobacter coli strain NPRC(S) 01.13898]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JRX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553