Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   WGQ50_RS05430 Genome accession   NZ_CP149884
Coordinates   1054843..1055793 (+) Length   316 a.a.
NCBI ID   WP_060786056.1    Uniprot ID   -
Organism   Campylobacter coli strain NPRC(S) 01.13898     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1039768..1059992 1054843..1055793 within 0


Gene organization within MGE regions


Location: 1039768..1059992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WGQ50_RS05360 (WGQ50_05360) - 1039768..1040697 (-) 930 WP_002777213.1 glycosyltransferase family 2 protein -
  WGQ50_RS05365 (WGQ50_05365) - 1040690..1041766 (-) 1077 WP_002787737.1 glycosyltransferase -
  WGQ50_RS05370 (WGQ50_05370) - 1041763..1043463 (-) 1701 WP_002787738.1 ATP-binding cassette domain-containing protein -
  WGQ50_RS05375 (WGQ50_05375) galE 1043457..1044443 (-) 987 WP_002787739.1 UDP-glucose 4-epimerase GalE -
  WGQ50_RS05380 (WGQ50_05380) - 1044500..1045291 (-) 792 WP_032684756.1 3'-5' exonuclease -
  WGQ50_RS05385 (WGQ50_05385) waaC 1045356..1046384 (+) 1029 WP_052791765.1 lipopolysaccharide heptosyltransferase I -
  WGQ50_RS05390 (WGQ50_05390) - 1046377..1047264 (+) 888 WP_002777219.1 lipid A biosynthesis lauroyl acyltransferase -
  WGQ50_RS05395 (WGQ50_05395) - 1047261..1048808 (+) 1548 WP_002844824.1 glycosyltransferase -
  WGQ50_RS05400 (WGQ50_05400) - 1048805..1049857 (+) 1053 WP_060785328.1 glycosyltransferase family 4 protein -
  WGQ50_RS05405 (WGQ50_05405) - 1049854..1051053 (-) 1200 WP_060785329.1 glycosyltransferase family 8 protein -
  WGQ50_RS05410 (WGQ50_05410) - 1051181..1052485 (+) 1305 WP_052783333.1 hypothetical protein -
  WGQ50_RS05415 (WGQ50_05415) - 1052482..1053531 (+) 1050 WP_002804034.1 asparagine synthase C-terminal domain-containing protein -
  WGQ50_RS05420 (WGQ50_05420) - 1053534..1053950 (+) 417 WP_002796922.1 adenylyltransferase/cytidyltransferase family protein -
  WGQ50_RS05425 (WGQ50_05425) - 1053969..1054784 (-) 816 WP_339078930.1 glycosyltransferase family 2 protein -
  WGQ50_RS05430 (WGQ50_05430) waaF 1054843..1055793 (+) 951 WP_060786056.1 glycosyltransferase family 9 protein Regulator
  WGQ50_RS05435 (WGQ50_05435) - 1055779..1056543 (-) 765 WP_002825331.1 glycosyltransferase family 25 protein -
  WGQ50_RS05440 (WGQ50_05440) gmhA 1056543..1057103 (-) 561 WP_041160152.1 D-sedoheptulose 7-phosphate isomerase -
  WGQ50_RS05445 (WGQ50_05445) rfaE1 1057100..1058485 (-) 1386 WP_057032643.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  WGQ50_RS05450 (WGQ50_05450) rfaD 1058478..1059431 (-) 954 WP_044600825.1 ADP-glyceromanno-heptose 6-epimerase -
  WGQ50_RS05455 (WGQ50_05455) - 1059432..1059950 (-) 519 WP_141043521.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36356.87 Da        Isoelectric Point: 10.3316

>NTDB_id=962047 WGQ50_RS05430 WP_060786056.1 1054843..1055793(+) (waaF) [Campylobacter coli strain NPRC(S) 01.13898]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFSNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGTGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNQNARWVHLDLACMPCMQKTCPLKHHKCMKDLKPEVIVKAIQNLINI

Nucleotide


Download         Length: 951 bp        

>NTDB_id=962047 WGQ50_RS05430 WP_060786056.1 1054843..1055793(+) (waaF) [Campylobacter coli strain NPRC(S) 01.13898]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCGCCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCTCAGTTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTTCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGCAAAATCGATTTTAGCTTTGCT
TTTAGGTCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAGCAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCACAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAATGCAAGATGGGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTGAAGTGATTGTAAAAGCGATTCAAAATTTAATTAATATCTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

92.357

99.367

0.918