Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   WKU41_RS27690 Genome accession   NZ_CP149854
Coordinates   5818174..5818731 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2024CK-00032     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5813174..5823731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKU41_RS27670 (WKU41_27670) pilR 5814450..5815787 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  WKU41_RS27675 (WKU41_27675) thiO 5815833..5816927 (-) 1095 WP_023089635.1 glycine oxidase ThiO -
  WKU41_RS27680 (WKU41_27680) - 5817062..5817571 (+) 510 WP_003112829.1 Tfp pilus assembly protein FimT/FimU -
  WKU41_RS27685 (WKU41_27685) - 5817677..5818183 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  WKU41_RS27690 (WKU41_27690) pilV 5818174..5818731 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  WKU41_RS27695 (WKU41_27695) pilW 5818728..5819552 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  WKU41_RS27700 (WKU41_27700) pilX 5819549..5820136 (+) 588 WP_015648054.1 type 4a pilus minor pilin PilX -
  WKU41_RS27705 (WKU41_27705) pilY1 5820148..5823639 (+) 3492 WP_015648053.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=962011 WKU41_RS27690 WP_003119423.1 5818174..5818731(+) (pilV) [Pseudomonas aeruginosa strain 2024CK-00032]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=962011 WKU41_RS27690 WP_003119423.1 5818174..5818731(+) (pilV) [Pseudomonas aeruginosa strain 2024CK-00032]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995