Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AABJ45_RS06075 Genome accession   NZ_AP028611
Coordinates   1197401..1199068 (-) Length   555 a.a.
NCBI ID   WP_000923570.1    Uniprot ID   Q8DPN3
Organism   Streptococcus pneumoniae strain Sep6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1192401..1204068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ45_RS06050 (TKY121527_11990) - 1193450..1193752 (-) 303 WP_000590566.1 PTS sugar transporter subunit IIB -
  AABJ45_RS06055 (TKY121527_12000) - 1193790..1194266 (-) 477 WP_338371621.1 PTS sugar transporter subunit IIA -
  AABJ45_RS06060 (TKY121527_12010) - 1194446..1194688 (+) 243 WP_000693378.1 hypothetical protein -
  AABJ45_RS06065 (TKY121527_12020) lepA 1194769..1196592 (-) 1824 WP_001047222.1 translation elongation factor 4 -
  AABJ45_RS06070 (TKY121527_12030) - 1196671..1197399 (-) 729 WP_000133332.1 metallophosphoesterase family protein -
  AABJ45_RS06075 (TKY121527_12040) recN 1197401..1199068 (-) 1668 WP_000923570.1 DNA repair protein RecN Machinery gene
  AABJ45_RS06080 (TKY121527_12050) - 1199075..1199506 (-) 432 WP_001034412.1 arginine repressor -
  AABJ45_RS06085 (TKY121527_12060) - 1199499..1200314 (-) 816 WP_001041073.1 TlyA family RNA methyltransferase -
  AABJ45_RS06090 (TKY121527_12070) - 1200307..1201182 (-) 876 WP_000743819.1 polyprenyl synthetase family protein -
  AABJ45_RS06095 (TKY121527_12080) - 1201179..1201391 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  AABJ45_RS06100 (TKY121527_12090) xseA 1201369..1202709 (-) 1341 WP_000417464.1 exodeoxyribonuclease VII large subunit -
  AABJ45_RS06105 (TKY121527_12100) udk 1202837..1203475 (-) 639 WP_001181378.1 uridine kinase -
  AABJ45_RS06110 (TKY121527_12110) - 1203583..1203885 (-) 303 WP_000985089.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62792.22 Da        Isoelectric Point: 4.6517

>NTDB_id=96200 AABJ45_RS06075 WP_000923570.1 1197401..1199068(-) (recN) [Streptococcus pneumoniae strain Sep6]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=96200 AABJ45_RS06075 WP_000923570.1 1197401..1199068(-) (recN) [Streptococcus pneumoniae strain Sep6]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGCCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCTATGAATGACATGGAAAGTGTCGAAGAGTATGATCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTGATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATGAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DPN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44

Multiple sequence alignment