Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACJED3_RS14240 Genome accession   NZ_CP174155
Coordinates   2677400..2678533 (+) Length   377 a.a.
NCBI ID   WP_014481175.1    Uniprot ID   -
Organism   Bacillus subtilis strain G01     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2672400..2683533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED3_RS14210 ywmC 2673209..2673892 (+) 684 WP_014481181.1 VWA domain-containing protein -
  ACJED3_RS14215 - 2674023..2674163 (+) 141 WP_014481180.1 hypothetical protein -
  ACJED3_RS14220 ywmD 2674216..2674890 (+) 675 WP_014481179.1 VWA domain-containing protein -
  ACJED3_RS14225 - 2674985..2675146 (+) 162 WP_003227706.1 hypothetical protein -
  ACJED3_RS14230 fdhD 2675379..2676167 (+) 789 WP_014481178.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  ACJED3_RS14235 moaA 2676183..2677208 (+) 1026 WP_014481177.1 GTP 3',8-cyclase MoaA -
  ACJED3_RS14240 rapC 2677400..2678533 (+) 1134 WP_014481175.1 response regulator aspartate phosphatase RapB Regulator
  ACJED3_RS14245 - 2678689..2679168 (+) 480 WP_026113664.1 hypothetical protein -
  ACJED3_RS14250 csbD 2679241..2679429 (+) 189 WP_014481173.1 stress response protein CsbD -
  ACJED3_RS14255 - 2679642..2679854 (+) 213 Protein_2759 urea ABC transporter substrate-binding protein -
  ACJED3_RS14260 - 2680121..2680279 (+) 159 WP_158332665.1 hypothetical protein -
  ACJED3_RS14265 ureA 2680473..2680790 (+) 318 WP_014478236.1 urease subunit gamma -
  ACJED3_RS14270 ureB 2680787..2681161 (+) 375 WP_014481169.1 urease subunit beta -
  ACJED3_RS14275 ureC 2681158..2682867 (+) 1710 WP_014481168.1 urease subunit alpha -
  ACJED3_RS14280 ywnA 2683002..2683403 (+) 402 WP_003227734.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45041.13 Da        Isoelectric Point: 4.7537

>NTDB_id=961995 ACJED3_RS14240 WP_014481175.1 2677400..2678533(+) (rapC) [Bacillus subtilis strain G01]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALTVFEDYQLEQLPKALFSLTRVLFKKQDSEAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHHEQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=961995 ACJED3_RS14240 WP_014481175.1 2677400..2678533(+) (rapC) [Bacillus subtilis strain G01]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCTGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATAGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATCGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTACTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCACGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.4

99.469

0.422