Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   AABJ45_RS05920 Genome accession   NZ_AP028611
Coordinates   1166093..1166557 (-) Length   154 a.a.
NCBI ID   WP_001135768.1    Uniprot ID   A4L7L7
Organism   Streptococcus pneumoniae strain Sep6     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1161093..1171557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ45_RS05900 (TKY121527_11680) - 1162044..1163012 (-) 969 WP_000105360.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  AABJ45_RS05905 (TKY121527_11690) pdrM 1163166..1164527 (-) 1362 WP_338371606.1 sodium-coupled multidrug efflux MATE transporter PdrM -
  AABJ45_RS05910 (TKY121527_11700) - 1164538..1164798 (-) 261 WP_001105925.1 hypothetical protein -
  AABJ45_RS05915 (TKY121527_11710) - 1164812..1166080 (-) 1269 WP_000924508.1 dihydroorotase -
  AABJ45_RS05920 (TKY121527_11720) mutX 1166093..1166557 (-) 465 WP_001135768.1 8-oxo-dGTP diphosphatase Machinery gene
  AABJ45_RS05925 (TKY121527_11730) - 1166567..1167220 (-) 654 WP_000401326.1 uracil-DNA glycosylase -
  AABJ45_RS05930 (TKY121527_11740) - 1167358..1167960 (-) 603 WP_001812270.1 hypothetical protein -
  AABJ45_RS05935 (TKY121527_11750) - 1168018..1168731 (-) 714 WP_000499429.1 YjjG family noncanonical pyrimidine nucleotidase -
  AABJ45_RS05940 (TKY121527_11760) dhaM 1169191..1169565 (-) 375 WP_000443795.1 dihydroxyacetone kinase phosphoryl donor subunit DhaM -
  AABJ45_RS05945 - 1169565..1169639 (-) 75 Protein_1175 dihydroxyacetone kinase subunit L -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17812.16 Da        Isoelectric Point: 4.2287

>NTDB_id=96198 AABJ45_RS05920 WP_001135768.1 1166093..1166557(-) (mutX) [Streptococcus pneumoniae strain Sep6]
MPQLATICYIDNGKELLMLHRNKKPNDVHEGKWIGVGGKLERGETPQECAAREILEETGLKAKPVLKGVITFPEFTPDLD
WYTYVFKVTEFEGDLIDCNEGTLEWVPYDEVLSKPTWEGDHTFVEWLLEDKPFFSAKFVYDGDKLLDTQVDFYE

Nucleotide


Download         Length: 465 bp        

>NTDB_id=96198 AABJ45_RS05920 WP_001135768.1 1166093..1166557(-) (mutX) [Streptococcus pneumoniae strain Sep6]
ATGCCTCAGTTAGCGACGATTTGCTACATTGATAATGGGAAAGAACTGCTCATGCTCCATCGTAATAAGAAACCCAATGA
TGTCCATGAAGGGAAATGGATTGGTGTGGGTGGTAAGCTAGAGAGAGGAGAGACGCCCCAGGAATGCGCGGCGCGTGAAA
TCCTTGAAGAAACAGGGCTCAAAGCCAAGCCAGTTCTAAAAGGTGTCATCACTTTTCCTGAATTTACACCAGATTTAGAC
TGGTACACCTATGTTTTTAAGGTGACGGAGTTTGAGGGCGACTTGATTGACTGCAATGAGGGGACGCTAGAATGGGTTCC
CTATGATGAGGTTTTGAGCAAGCCGACTTGGGAAGGTGACCACACCTTTGTTGAGTGGCTTTTAGAGGATAAACCCTTCT
TTTCAGCCAAGTTTGTTTATGATGGGGATAAATTGTTGGATACCCAAGTTGATTTCTATGAATAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(2-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A4L7L7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

98.701

100

0.987