Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   ACJED3_RS09440 Genome accession   NZ_CP174155
Coordinates   1741674..1742108 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain G01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1736674..1747108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED3_RS09425 poxB 1737073..1738797 (-) 1725 WP_014478872.1 pyruvate oxidase -
  ACJED3_RS09430 mutT 1738864..1739313 (-) 450 WP_014478871.1 8-oxo-dGTP diphosphatase MutT -
  ACJED3_RS09435 topB 1739426..1741609 (-) 2184 WP_014478870.1 DNA topoisomerase III -
  ACJED3_RS09440 lrpC 1741674..1742108 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  ACJED3_RS09445 ydzA 1742293..1742583 (+) 291 WP_014478869.1 DUF3817 domain-containing protein -
  ACJED3_RS09450 amj 1742628..1743437 (-) 810 WP_014478868.1 lipid II flippase Amj -
  ACJED3_RS09455 ydaG 1743943..1744365 (-) 423 WP_014478867.1 pyridoxamine 5'-phosphate oxidase family protein -
  ACJED3_RS09460 ydaF 1744443..1744994 (-) 552 WP_014478866.1 GNAT family N-acetyltransferase -
  ACJED3_RS09465 lyxE 1745082..1745585 (-) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  ACJED3_RS09470 ydaD 1745601..1746461 (-) 861 WP_014478865.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=961961 ACJED3_RS09440 WP_003246585.1 1741674..1742108(-) (lrpC) [Bacillus subtilis strain G01]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=961961 ACJED3_RS09440 WP_003246585.1 1741674..1742108(-) (lrpC) [Bacillus subtilis strain G01]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1