Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACJED3_RS08000 Genome accession   NZ_CP174155
Coordinates   1471829..1472959 (-) Length   376 a.a.
NCBI ID   WP_014479091.1    Uniprot ID   -
Organism   Bacillus subtilis strain G01     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1466829..1477959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED3_RS07955 yesK 1467089..1467391 (-) 303 Protein_1566 YesK-like family protein -
  ACJED3_RS07960 yesJ 1467414..1467956 (-) 543 WP_014479097.1 GNAT family N-acetyltransferase -
  ACJED3_RS07965 cotJC 1468081..1468650 (-) 570 WP_014479096.1 spore coat protein CotJC -
  ACJED3_RS07970 cotJB 1468665..1468928 (-) 264 WP_014479095.1 spore coat protein CotJB -
  ACJED3_RS07975 cotJA 1468912..1469160 (-) 249 WP_014479094.1 spore coat-associated protein CotJA -
  ACJED3_RS07980 yezE 1469337..1469921 (-) 585 WP_014479093.1 TetR/AcrR family transcriptional regulator -
  ACJED3_RS07985 - 1470036..1470515 (-) 480 WP_041516597.1 spore coat protein -
  ACJED3_RS07990 yeeI 1470787..1471506 (-) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ACJED3_RS07995 phrH 1471666..1471839 (-) 174 WP_003242557.1 phosphatase RapH inhibitor PhrH -
  ACJED3_RS08000 rapC 1471829..1472959 (-) 1131 WP_014479091.1 response regulator aspartate phosphatase RapH Regulator
  ACJED3_RS08005 - 1473103..1474124 (-) 1022 Protein_1576 hypothetical protein -
  ACJED3_RS08010 yeeF 1474336..1476345 (+) 2010 WP_031600245.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  ACJED3_RS08015 - 1476350..1476823 (+) 474 WP_014479086.1 immunity protein YezG family protein -
  ACJED3_RS08020 - 1477422..1477619 (+) 198 WP_014479085.1 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44030.39 Da        Isoelectric Point: 5.9937

>NTDB_id=961958 ACJED3_RS08000 WP_014479091.1 1471829..1472959(-) (rapC) [Bacillus subtilis strain G01]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEVLKAEVEQDIQKMEEDQDLLIYYSLMCFRHQLMLDYLEPGQPYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEKALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=961958 ACJED3_RS08000 WP_014479091.1 1471829..1472959(-) (rapC) [Bacillus subtilis strain G01]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTACAAGATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGGTTCTGAAAGCGGAGGTGGAGCAGGACATTCAGAAGATGGAAGAGGATCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAGCCTTACGGAAATCGTCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAACCATCCCTTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAAAAGGCGCTGGAATTGGCCATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCCGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.957

100

0.41
  rapF Bacillus subtilis subsp. subtilis str. 168

40.053

100

0.402