Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   ACJED3_RS03880 Genome accession   NZ_CP174155
Coordinates   712056..712631 (-) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   O34857
Organism   Bacillus subtilis strain G01     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 707056..717631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED3_RS03860 moeB 707954..708973 (-) 1020 WP_014479671.1 molybdopterin-synthase adenylyltransferase MoeB -
  ACJED3_RS03865 mobA 709024..709623 (-) 600 WP_014479670.1 molybdenum cofactor guanylyltransferase -
  ACJED3_RS03870 cse15 709760..710725 (+) 966 WP_014479669.1 spore protein Cse15 -
  ACJED3_RS03875 - 710838..711988 (+) 1151 WP_087614160.1 IS3 family transposase -
  ACJED3_RS03880 rok 712056..712631 (-) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  ACJED3_RS03885 ykuV 713097..713543 (-) 447 WP_014479665.1 thiol-disulfide oxidoreductase YkuV -
  ACJED3_RS03890 ahpA 713613..714155 (-) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  ACJED3_RS03895 mscT 714392..715195 (+) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  ACJED3_RS03900 ykuS 715232..715477 (-) 246 WP_003232382.1 YkuS family protein -
  ACJED3_RS03905 dapI 715539..716663 (-) 1125 WP_014476668.1 N-acetyldiaminopimelate deacetylase -
  ACJED3_RS03910 dapD 716733..717443 (-) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=961924 ACJED3_RS03880 WP_003232378.1 712056..712631(-) (rok) [Bacillus subtilis strain G01]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=961924 ACJED3_RS03880 WP_003232378.1 712056..712631(-) (rok) [Bacillus subtilis strain G01]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5ZUX
  PDB 5ZUZ

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1