Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   ACJED3_RS02465 Genome accession   NZ_CP174155
Coordinates   427352..427783 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain G01     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 422352..432783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED3_RS02455 hexA 423836..426412 (-) 2577 WP_014479821.1 DNA mismatch repair protein MutS Machinery gene
  ACJED3_RS02460 cotE 426545..427090 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  ACJED3_RS02465 ymcA 427352..427783 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  ACJED3_RS02470 miaB 427785..429314 (-) 1530 WP_014479820.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ACJED3_RS02475 kbl 429462..430640 (-) 1179 WP_014479819.1 glycine C-acetyltransferase -
  ACJED3_RS02480 tdh 430653..431696 (-) 1044 WP_014479818.1 L-threonine 3-dehydrogenase -
  ACJED3_RS02485 spoVS 431961..432221 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=961910 ACJED3_RS02465 WP_003231834.1 427352..427783(-) (ymcA) [Bacillus subtilis strain G01]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=961910 ACJED3_RS02465 WP_003231834.1 427352..427783(-) (ymcA) [Bacillus subtilis strain G01]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1