Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WKV34_RS08360 Genome accession   NZ_CP149825
Coordinates   1692618..1693244 (+) Length   208 a.a.
NCBI ID   WP_041910603.1    Uniprot ID   A0A8E1RPS6
Organism   Enterobacter bugandensis strain 2024CK-00243     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1687618..1698244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKV34_RS08340 (WKV34_08340) - 1688019..1689779 (-) 1761 WP_041910605.1 Lon protease family protein -
  WKV34_RS08345 (WKV34_08345) matP 1689965..1690417 (+) 453 WP_023332611.1 macrodomain Ter protein MatP -
  WKV34_RS08350 (WKV34_08350) ompA 1690481..1691536 (-) 1056 WP_108780329.1 porin OmpA -
  WKV34_RS08355 (WKV34_08355) sulA 1691891..1692400 (-) 510 WP_041910604.1 SOS-induced cell division inhibitor SulA -
  WKV34_RS08360 (WKV34_08360) sxy/tfoX 1692618..1693244 (+) 627 WP_041910603.1 TfoX/Sxy family DNA transformation protein Regulator
  WKV34_RS08365 (WKV34_08365) yccS 1693201..1695363 (-) 2163 WP_041910602.1 YccS family putative transporter -
  WKV34_RS08370 (WKV34_08370) - 1695383..1695829 (-) 447 WP_045630040.1 YccF domain-containing protein -
  WKV34_RS08375 (WKV34_08375) helD 1695953..1698007 (+) 2055 WP_060572725.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23988.61 Da        Isoelectric Point: 9.2151

>NTDB_id=961737 WKV34_RS08360 WP_041910603.1 1692618..1693244(+) (sxy/tfoX) [Enterobacter bugandensis strain 2024CK-00243]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSEGELYLRACEESAKYCVKNAASFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSTFALNAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARESWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPLENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=961737 WKV34_RS08360 WP_041910603.1 1692618..1693244(+) (sxy/tfoX) [Enterobacter bugandensis strain 2024CK-00243]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTGTCACCACTGGGTGAAATTCATCATCGCGCGCT
GTTCGGCGGCTATACCCTGGCAGTGGATGATGCGGTTTTTGCCATGGTGTCAGAAGGTGAGCTCTACCTCCGCGCCTGTG
AAGAAAGTGCGAAATACTGTGTGAAAAATGCCGCGTCTTTTTTGACCCTGATGAAGCGGGGCCGTCCGGTGCTTCTCAAC
TATTACCGGGTGGATGACGGGCTATGGCAGGACAGGGAGCGTCTGCTTCAGCTCTCCACTTTCGCACTTAATGCGGCAAG
AAAAGAGCGTTACCAGCGGCATCAGCGCAATCGACTTAAGGACCTGCCAAACCTGACCTTTCAGCTGGAAGTGTTGCTCT
TTGAAGCGGGCATCACCAACGAAGAAACGCTGCGGGCGCTTGGCGCTAGGGAGAGCTGGCTGAAGATGCGGGCGAAAAAT
AAAGCGCTGAGTATCAAAGTGCTATTCGCGCTGGAAGGGGCGATCGAGGGGCTGCATGAGGCGGCACTCCCGGCCGGCAT
TCGCCGGGAGTTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACTGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.081

95.192

0.553