Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACIX56_RS09995 Genome accession   NZ_CP173676
Coordinates   2096874..2098955 (-) Length   693 a.a.
NCBI ID   WP_237601098.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain APL2303082E     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2091874..2103955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIX56_RS09980 (ACIX56_09980) menB 2093672..2094529 (-) 858 WP_005599432.1 1,4-dihydroxy-2-naphthoyl-CoA synthase -
  ACIX56_RS09985 (ACIX56_09985) - 2094664..2096370 (-) 1707 WP_237593915.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  ACIX56_RS09990 (ACIX56_09990) rpoZ 2096466..2096747 (-) 282 WP_005599441.1 DNA-directed RNA polymerase subunit omega -
  ACIX56_RS09995 (ACIX56_09995) recG 2096874..2098955 (-) 2082 WP_237601098.1 ATP-dependent DNA helicase RecG Machinery gene
  ACIX56_RS10000 (ACIX56_10000) - 2099079..2099507 (-) 429 WP_005619039.1 type II toxin-antitoxin system VapC family toxin -
  ACIX56_RS10005 (ACIX56_10005) - 2099507..2099794 (-) 288 WP_005599447.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  ACIX56_RS10010 (ACIX56_10010) proS 2100000..2101715 (+) 1716 WP_005618303.1 proline--tRNA ligase -
  ACIX56_RS10015 (ACIX56_10015) - 2101781..2101969 (-) 189 WP_005618305.1 hypothetical protein -
  ACIX56_RS10020 (ACIX56_10020) - 2101972..2102553 (-) 582 WP_005599450.1 sigma-70 family RNA polymerase sigma factor -
  ACIX56_RS10025 (ACIX56_10025) msrP 2102642..2103598 (+) 957 WP_005619040.1 protein-methionine-sulfoxide reductase catalytic subunit MsrP -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 77130.20 Da        Isoelectric Point: 8.8717

>NTDB_id=961705 ACIX56_RS09995 WP_237601098.1 2096874..2098955(-) (recG) [Actinobacillus pleuropneumoniae strain APL2303082E]
MSEQLLDGVPLTALSGVGVAIAEKLSRIGINNVQDLLFHLPYRYEDRTRITPIIDVRPESFSTIEGIVQVTEVQFGRRPI
LSTVLSDGTSKITLKFFNFNAGMKNSLTAGTRVKAFGEIKRGRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQ
NSLRKLTEQALALLDKIKVGELLPDEYNLHKYSLKEALQLLHRPPPDISAEQLEKGEHPAQKRLIFEELLAHNLAMQQVR
VGVNQLTATPLCYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDVGSGKTLVAALAALLAIDNGKQV
ALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGKARTAQLEAIKNGEVQMIIGTHALFQESVEFHNLALVIIDEQH
RFGVHQRLTLREKGAKDGIYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAACK
NEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQAIMAEFKAANIDLLVATTVIEVGVDVP
NASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLYKPPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQ
TGMAEFKVANLMRDRKMIPLVQNYAKQIIQQNPPLAKALIRRWLGERTEYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=961705 ACIX56_RS09995 WP_237601098.1 2096874..2098955(-) (recG) [Actinobacillus pleuropneumoniae strain APL2303082E]
ATGAGCGAACAATTACTAGACGGTGTGCCACTTACCGCCCTTTCAGGAGTGGGGGTTGCGATTGCGGAAAAACTGAGTCG
AATCGGCATTAATAACGTACAAGATCTGTTATTTCATTTGCCTTACCGCTATGAAGATCGCACCCGAATTACGCCGATTA
TCGATGTGCGTCCGGAAAGTTTTTCTACCATCGAAGGCATCGTGCAAGTTACCGAAGTGCAATTCGGCCGCCGTCCGATT
TTGTCCACCGTACTGTCTGACGGCACCAGTAAAATTACGCTGAAATTCTTTAATTTTAATGCGGGGATGAAAAACAGCCT
GACTGCCGGCACACGTGTAAAAGCTTTTGGCGAAATCAAACGCGGACGTTTTATGGCGGAAATTCATCACCCCGAATATC
AAATTATTCGCAATAATCAACCGCTTGAACTTGCCGAAACTTTAACGCCGATTTACTCCACAACAGAAGGTTTAAAGCAA
AATTCGTTACGTAAGCTCACCGAGCAAGCATTAGCGTTATTAGATAAAATCAAAGTCGGTGAACTGTTGCCGGACGAATA
CAATCTGCATAAATACAGCTTAAAAGAAGCGTTGCAATTATTACACCGCCCGCCGCCGGATATTTCTGCCGAACAGTTGG
AAAAAGGTGAGCATCCGGCACAAAAACGGCTGATTTTTGAAGAATTACTGGCGCACAACTTAGCAATGCAGCAAGTACGA
GTCGGAGTCAATCAGCTTACTGCTACACCGCTATGTTATCAAACCGATCTCAAAAGTCGCTTTTTGGCGAGCTTGCCGTT
TAAACCGACCAACGCCCAAAGCCGTGTGACGGCGGATATCGAGCAAGATTTAGCCAAATCCTCACCAATGATGCGATTAG
TACAAGGCGATGTCGGATCGGGCAAAACTTTAGTTGCTGCGCTTGCCGCCCTGCTTGCGATTGATAACGGCAAACAAGTG
GCATTAATGGCACCGACCGAAATCCTTGCCGAGCAGCACGCCAATAACTTTGCAAACTGGCTACGCCCGTTCGGTATTGA
AGTCGGCTGGCTTGCCGGTAAAGTCAAAGGCAAAGCTCGCACCGCACAACTGGAAGCGATTAAAAACGGCGAAGTGCAGA
TGATTATCGGCACGCACGCCCTCTTCCAAGAAAGCGTCGAGTTTCATAACCTCGCATTAGTGATTATTGATGAACAACAC
CGTTTTGGTGTACACCAACGCTTAACCCTACGTGAAAAAGGGGCGAAAGACGGTATTTATCCGCACCAGCTAATTATGAC
TGCTACGCCAATTCCTCGTACCTTAGCAATGACGGTCTATGCCGATCTGGATACCTCTATTATTGACGAGCTACCACCGG
GGCGGACACCGATTACCACCGTAGCAATTTCGGAAGACAGAAGAGATGAAATTGTGCGCCGTGTGTATGCCGCCTGCAAA
AACGAAAAACGCCAAGCCTATTGGGTTTGTACCCTAATTGATGAATCGGAAGTCTTGGAAGCGCAAGCGGCAGCGGCGAT
TGCCGAAGATTTACAACGAGCCTTACCGGATTTACGTATCGGCTTGGTACACGGACGAATGAAGCCGCAAGAAAAGCAAG
CGATTATGGCGGAATTTAAAGCGGCAAATATCGATTTATTGGTTGCCACCACAGTGATTGAAGTGGGGGTTGATGTGCCG
AATGCCAGCCTAATGATTATCGAAAACTCCGAACGTTTAGGGCTTGCTCAACTCCATCAATTACGTGGACGTGTCGGACG
TGGTGCAACCGCTTCCCATTGCGTGTTGCTGTATAAACCGCCGCTTGGCAAAATTTCGAGTAAACGCTTACAAGTGCTAC
GTGATAGCCAAGACGGTTTCTATATTGCCGAAAAAGATTTGGAAATTCGTGGTACCGGTGAAATTCTCGGTACCAAACAA
ACCGGTATGGCGGAATTTAAAGTGGCGAATTTAATGCGAGATCGCAAAATGATTCCATTAGTACAAAACTATGCCAAGCA
AATTATTCAGCAAAATCCACCGCTTGCAAAAGCACTGATTCGCCGCTGGCTTGGCGAGCGTACCGAATACAGCAACGCCT
AA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-676)

RecG wedge domain (RecG_wedge)

(16-172)

Helicase conserved C-terminal domain (Helicase_C)

(476-588)

DEAD/DEAH box helicase (DEAD)

(292-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.256

96.97

0.478
  recG Bacillus subtilis subsp. subtilis str. 168

38.996

97.691

0.381
  recG/mmsA Streptococcus pneumoniae R6

39.084

94.517

0.369
  recG/mmsA Streptococcus pneumoniae R36A

39.084

94.517

0.369