Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACIX56_RS09075 Genome accession   NZ_CP173676
Coordinates   1925659..1926648 (+) Length   329 a.a.
NCBI ID   WP_012478568.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain APL2303082E     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1920659..1931648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIX56_RS09055 (ACIX56_09060) - 1921286..1922254 (-) 969 WP_005618127.1 mannose/fructose/sorbose PTS transporter subunit IIA -
  ACIX56_RS09060 (ACIX56_09065) - 1922424..1923773 (-) 1350 WP_005618129.1 GntP family permease -
  ACIX56_RS09065 (ACIX56_09070) - 1923951..1924466 (+) 516 WP_005618131.1 gluconokinase -
  ACIX56_RS09070 (ACIX56_09075) gntR 1924538..1925536 (-) 999 WP_005618133.1 gluconate operon transcriptional repressor GntR -
  ACIX56_RS09075 (ACIX56_09080) cytR 1925659..1926648 (+) 990 WP_012478568.1 substrate-binding domain-containing protein Regulator
  ACIX56_RS09080 (ACIX56_09085) rbsD 1926769..1927188 (+) 420 WP_005599106.1 D-ribose pyranase -
  ACIX56_RS09085 (ACIX56_09090) rbsA 1927201..1928682 (+) 1482 WP_005618138.1 ribose ABC transporter ATP-binding protein RbsA -
  ACIX56_RS09090 (ACIX56_09095) rbsC 1928739..1929698 (+) 960 WP_005618141.1 ribose ABC transporter permease -
  ACIX56_RS09095 (ACIX56_09100) rbsB 1929722..1930594 (+) 873 WP_005599112.1 ribose ABC transporter substrate-binding protein RbsB -
  ACIX56_RS09100 (ACIX56_09105) rbsK 1930667..1931578 (+) 912 WP_005599115.1 ribokinase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 36918.24 Da        Isoelectric Point: 6.7245

>NTDB_id=961701 ACIX56_RS09075 WP_012478568.1 1925659..1926648(+) (cytR) [Actinobacillus pleuropneumoniae strain APL2303082E]
MATMKDIARIAGVSTSTVSHVINNSRFVSDEIRQRIEKVVAELNYTPSLVARSLKVKETNTIGMLVTTSSNPFFAEVVRH
VERYCERHNYHLILVNTDGNSTNLAQHLARLLRKQVDGLLLMCSEPQDLDESVMANIHLPMVVIDWWQQALKADNVHENS
ELGGYLATKALIDAGYTEIAVITGEQSKSHTLNRLQGYKRAILEANLPIRPEWIVEGHFDYQAGLEYASRLLALNSRPQA
IFAMSDSIAIGVYQAAWQAGLRIPQDIAVIGYDNIELAQYLSPPLSTIHQPKARLAKNAVEQLIARIHQPDKAYQEIELT
PELVVRRSF

Nucleotide


Download         Length: 990 bp        

>NTDB_id=961701 ACIX56_RS09075 WP_012478568.1 1925659..1926648(+) (cytR) [Actinobacillus pleuropneumoniae strain APL2303082E]
ATGGCAACAATGAAAGATATAGCTCGGATTGCGGGCGTTTCCACTTCCACCGTCTCCCACGTGATCAATAATTCTCGCTT
TGTGAGTGATGAAATTCGTCAGCGGATCGAAAAAGTGGTGGCGGAACTGAATTATACGCCTTCGTTAGTTGCGCGCAGCT
TGAAAGTAAAAGAAACCAATACGATCGGTATGTTGGTAACCACCAGTAGTAACCCGTTTTTTGCGGAAGTAGTACGTCAC
GTCGAACGTTATTGTGAACGCCATAACTATCATTTAATTTTAGTGAATACTGACGGTAACAGTACCAATTTAGCACAACA
TTTAGCCCGCTTGTTACGCAAACAAGTGGACGGTTTATTATTAATGTGTTCCGAGCCACAAGATTTGGATGAAAGTGTGA
TGGCGAATATTCACTTGCCAATGGTGGTGATTGACTGGTGGCAACAGGCATTGAAAGCGGATAACGTACACGAAAATTCG
GAATTAGGTGGTTATCTTGCAACAAAAGCGTTAATTGATGCCGGTTATACCGAGATTGCGGTAATTACCGGTGAGCAATC
GAAATCGCATACATTAAACCGTTTACAAGGTTACAAGCGGGCGATTCTAGAGGCAAATTTGCCAATTCGTCCGGAATGGA
TTGTGGAAGGTCACTTCGATTATCAAGCCGGTTTGGAATATGCAAGCCGGTTATTGGCACTAAACTCTCGCCCGCAAGCG
ATTTTTGCGATGAGCGATAGCATTGCAATCGGTGTATATCAAGCCGCTTGGCAAGCCGGTTTACGTATTCCGCAAGATAT
TGCGGTGATCGGTTACGATAATATCGAATTGGCACAATATCTCTCTCCTCCGCTTTCTACGATTCATCAACCCAAAGCCC
GTTTGGCGAAGAATGCGGTGGAGCAGTTGATCGCCCGTATTCATCAGCCGGATAAAGCTTATCAAGAAATCGAACTTACT
CCCGAACTTGTCGTTCGCCGTTCTTTTTAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.061

100

0.362