Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   WKI13_RS04200 Genome accession   NZ_CP149817
Coordinates   1028067..1029434 (+) Length   455 a.a.
NCBI ID   WP_018274833.1    Uniprot ID   -
Organism   Teredinibacter turnerae strain T7902     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1023067..1034434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKI13_RS04175 (WKI13_04175) - 1024000..1024548 (-) 549 WP_018274828.1 hypothetical protein -
  WKI13_RS04180 (WKI13_04180) - 1024560..1025057 (-) 498 WP_018274829.1 hypothetical protein -
  WKI13_RS04185 (WKI13_04185) - 1025070..1026152 (-) 1083 WP_018274830.1 phage tail sheath subtilisin-like domain-containing protein -
  WKI13_RS04190 (WKI13_04190) - 1026235..1027311 (-) 1077 WP_018274831.1 hypothetical protein -
  WKI13_RS04195 (WKI13_04195) - 1027361..1027717 (-) 357 WP_018274832.1 hypothetical protein -
  WKI13_RS04200 (WKI13_04200) radA 1028067..1029434 (+) 1368 WP_018274833.1 DNA repair protein RadA Machinery gene
  WKI13_RS04205 (WKI13_04205) - 1029523..1031055 (-) 1533 WP_018274834.1 DHA2 family efflux MFS transporter permease subunit -
  WKI13_RS04210 (WKI13_04210) - 1031052..1032113 (-) 1062 WP_018274835.1 HlyD family secretion protein -
  WKI13_RS04215 (WKI13_04215) - 1032135..1032560 (-) 426 WP_018274836.1 MarR family winged helix-turn-helix transcriptional regulator -
  WKI13_RS04220 (WKI13_04220) - 1032733..1033854 (+) 1122 WP_018274837.1 sorbosone dehydrogenase family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48348.82 Da        Isoelectric Point: 6.9988

>NTDB_id=961656 WKI13_RS04200 WP_018274833.1 1028067..1029434(+) (radA) [Teredinibacter turnerae strain T7902]
MAKAKTAYVCNDCGADFAKWQGQCTECGAWNTLKEVRLGGSVKTSASGGRSGYAGSLEAKVTPLAEINLEELPRFSSTLE
EFDRVLGGGFVPGSVVLIGGHPGAGKSTVLLQVLCQLAQQQDALYVTGEESLQQVAMRASRLGLPTANLQMLSATDVDAV
VQAAAQVKPKIMVVDSIQVMHQAEIQSAPGSVSQVRECAAELTRFAKQSGTVLILVGHVTKDGSLAGPKVLEHIIDCSIM
LEGSHDSRFRTLRGIKNRFGAVNELGVFAMTEQGLKEVSNPSAIFLQRGDEVSSGSVVMVVWEGTRPLLVEIQALVDASS
LGNPRRVAVGLEQNRLSMLLAILHRHGGLMVGDQDVFVNVVGGVKIMEPSADLALLFALVSSFRDHPLPRELVVFGEVGL
AGEIRPVPSGQERIREAAKHGFKKAIVPHGNAPREPIKGMEVVVVKKLSEALGAI

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=961656 WKI13_RS04200 WP_018274833.1 1028067..1029434(+) (radA) [Teredinibacter turnerae strain T7902]
TTGGCTAAAGCGAAAACTGCGTATGTTTGTAATGATTGTGGCGCTGACTTTGCCAAATGGCAGGGCCAATGTACGGAGTG
CGGGGCCTGGAATACCTTAAAAGAGGTGCGCCTGGGTGGCAGCGTTAAAACAAGCGCGAGTGGCGGTCGCAGTGGGTATG
CAGGCAGCCTGGAAGCCAAGGTCACGCCACTGGCGGAGATCAATCTGGAAGAGTTGCCGCGTTTCAGCTCAACCCTCGAG
GAATTCGATCGCGTGTTGGGCGGTGGCTTTGTGCCGGGTTCTGTGGTGTTGATTGGCGGCCACCCAGGTGCCGGGAAGTC
GACCGTGTTGCTGCAGGTACTTTGCCAGTTGGCGCAACAGCAGGATGCACTCTACGTCACGGGTGAGGAATCGCTGCAGC
AGGTCGCTATGCGGGCGTCGCGCCTCGGTTTGCCCACCGCAAACCTGCAAATGCTGTCGGCAACGGATGTGGACGCGGTT
GTCCAGGCGGCCGCTCAGGTCAAACCCAAAATCATGGTGGTGGACTCGATTCAGGTGATGCACCAGGCGGAAATTCAATC
GGCGCCGGGTAGTGTGTCGCAGGTGCGCGAGTGTGCCGCCGAGTTAACGCGTTTTGCCAAGCAGTCGGGCACGGTGCTGA
TTCTCGTCGGTCATGTCACTAAAGACGGTTCTCTGGCCGGGCCGAAAGTGCTCGAACATATTATCGACTGTTCGATAATG
CTCGAAGGCTCCCACGACTCCCGGTTTCGTACCCTGCGCGGAATCAAAAATCGCTTTGGCGCAGTGAATGAACTCGGCGT
GTTTGCGATGACCGAGCAGGGCTTGAAGGAAGTTTCCAACCCATCGGCGATCTTTTTACAGCGCGGCGACGAAGTGTCCA
GTGGTTCGGTGGTGATGGTGGTGTGGGAAGGCACGCGACCCTTGCTGGTGGAGATACAAGCGCTGGTGGATGCGTCCAGT
TTGGGGAATCCGCGTCGGGTTGCGGTGGGGCTTGAGCAAAACCGGCTGTCCATGTTGCTGGCCATTTTGCATCGACACGG
CGGTTTGATGGTGGGCGATCAGGATGTGTTTGTGAATGTGGTTGGCGGAGTGAAAATTATGGAGCCTAGCGCCGACCTCG
CACTTTTGTTTGCGCTGGTGTCGAGTTTTCGCGATCACCCGCTACCGCGTGAGCTGGTGGTGTTCGGTGAAGTCGGCCTT
GCCGGTGAAATTCGCCCGGTGCCCAGCGGCCAGGAGCGCATTCGCGAGGCGGCCAAACACGGATTTAAAAAAGCCATCGT
GCCCCACGGCAACGCCCCGCGCGAGCCTATTAAAGGAATGGAAGTGGTGGTGGTAAAAAAACTGAGCGAGGCGTTGGGGG
CGATTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(83-223)

Subunit ChlI of Mg-chelatase (ChlI)

(347-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.359

100

0.486
  radA Streptococcus pneumoniae Rx1

43.818

100

0.444
  radA Streptococcus pneumoniae D39

43.818

100

0.444
  radA Streptococcus pneumoniae R6

43.818

100

0.444
  radA Streptococcus pneumoniae TIGR4

43.818

100

0.444
  radA Streptococcus mitis NCTC 12261

44.201

100

0.444
  radA Streptococcus mitis SK321

43.982

100

0.442