Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACI5E1_RS08380 Genome accession   NZ_CP173662
Coordinates   1813054..1814043 (+) Length   329 a.a.
NCBI ID   WP_012478568.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain APL2305174E     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1808054..1819043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI5E1_RS08360 (ACI5E1_08350) - 1808625..1809593 (-) 969 WP_404811294.1 mannose/fructose/sorbose PTS transporter subunit IIA -
  ACI5E1_RS08365 (ACI5E1_08355) - 1809783..1811132 (-) 1350 WP_005616063.1 GntP family permease -
  ACI5E1_RS08370 (ACI5E1_08360) - 1811311..1811823 (+) 513 WP_005613248.1 gluconokinase -
  ACI5E1_RS08375 (ACI5E1_08365) gntR 1811918..1812916 (-) 999 WP_237593373.1 gluconate operon transcriptional repressor GntR -
  ACI5E1_RS08380 (ACI5E1_08370) cytR 1813054..1814043 (+) 990 WP_012478568.1 substrate-binding domain-containing protein Regulator
  ACI5E1_RS08385 (ACI5E1_08375) rbsD 1814164..1814583 (+) 420 WP_005602428.1 D-ribose pyranase -
  ACI5E1_RS08390 (ACI5E1_08380) rbsA 1814596..1816077 (+) 1482 WP_005605674.1 ribose ABC transporter ATP-binding protein RbsA -
  ACI5E1_RS08395 (ACI5E1_08385) rbsC 1816130..1817089 (+) 960 WP_237593374.1 ribose ABC transporter permease -
  ACI5E1_RS08400 (ACI5E1_08390) rbsB 1817113..1817985 (+) 873 WP_005599112.1 ribose ABC transporter substrate-binding protein RbsB -
  ACI5E1_RS08405 (ACI5E1_08395) rbsK 1818058..1818969 (+) 912 WP_005599115.1 ribokinase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 36918.24 Da        Isoelectric Point: 6.7245

>NTDB_id=961644 ACI5E1_RS08380 WP_012478568.1 1813054..1814043(+) (cytR) [Actinobacillus pleuropneumoniae strain APL2305174E]
MATMKDIARIAGVSTSTVSHVINNSRFVSDEIRQRIEKVVAELNYTPSLVARSLKVKETNTIGMLVTTSSNPFFAEVVRH
VERYCERHNYHLILVNTDGNSTNLAQHLARLLRKQVDGLLLMCSEPQDLDESVMANIHLPMVVIDWWQQALKADNVHENS
ELGGYLATKALIDAGYTEIAVITGEQSKSHTLNRLQGYKRAILEANLPIRPEWIVEGHFDYQAGLEYASRLLALNSRPQA
IFAMSDSIAIGVYQAAWQAGLRIPQDIAVIGYDNIELAQYLSPPLSTIHQPKARLAKNAVEQLIARIHQPDKAYQEIELT
PELVVRRSF

Nucleotide


Download         Length: 990 bp        

>NTDB_id=961644 ACI5E1_RS08380 WP_012478568.1 1813054..1814043(+) (cytR) [Actinobacillus pleuropneumoniae strain APL2305174E]
ATGGCAACAATGAAAGATATAGCTCGGATTGCGGGCGTTTCAACTTCCACCGTTTCCCATGTGATCAATAACTCACGTTT
TGTGAGTGACGAAATTCGTCAGCGGATTGAAAAAGTGGTGGCGGAACTCAATTACACGCCTTCGTTAGTCGCTCGCAGTC
TGAAAGTGAAAGAAACCAATACGATCGGTATGTTGGTAACCACCAGTAGTAACCCGTTTTTTGCGGAAGTAGTACGTCAC
GTCGAACGTTATTGTGAACGCCATAATTATCATTTAATTTTAGTGAATACTGACGGTAACAGTACCAATTTAGCACAACA
TTTAGCCCGCTTGTTACGCAAACAAGTGGACGGTTTATTATTAATGTGTTCCGAGCCACAAGATTTGGACGAAAGTGTGA
TGGCGAATATTCACTTGCCAATGGTGGTGATTGACTGGTGGCAACAGGCATTGAAAGCGGATAACGTACACGAAAATTCG
GAATTAGGTGGTTATCTTGCAACAAAAGCGTTAATTGATGCCGGTTATACCGAGATTGCGGTAATTACCGGTGAGCAATC
GAAATCGCATACATTAAACCGTTTACAAGGTTACAAGCGGGCGATTCTAGAGGCAAATTTGCCAATTCGTCCGGAATGGA
TTGTGGAAGGTCACTTCGATTATCAAGCCGGTTTGGAATATGCAAGCCGGTTATTGGCACTAAACTCTCGCCCGCAAGCG
ATTTTTGCGATGAGCGATAGCATTGCAATCGGTGTATATCAAGCCGCTTGGCAAGCCGGTTTACGTATTCCGCAAGATAT
TGCGGTGATCGGTTACGATAATATCGAATTGGCACAATATCTCTCTCCTCCGCTTTCTACGATTCATCAACCCAAAGCCC
GTTTGGCGAAGAATGCGGTGGAGCAGTTGATCGCCCGTATTCATCAGCCGGATAAAGCTTATCAAGAAATCGAACTTACT
CCCGAACTTGTCGTTCGCCGTTCTTTTTAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.061

100

0.362