Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ACI5E1_RS00395 Genome accession   NZ_CP173662
Coordinates   85138..85743 (-) Length   201 a.a.
NCBI ID   WP_005618700.1    Uniprot ID   A0ABM6X5M1
Organism   Actinobacillus pleuropneumoniae strain APL2305174E     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 80138..90743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI5E1_RS00365 (ACI5E1_00365) - 80886..81875 (+) 990 WP_012262684.1 peptide ABC transporter ATP-binding protein -
  ACI5E1_RS00370 (ACI5E1_00370) psiE 81948..82358 (-) 411 WP_005595704.1 phosphate-starvation-inducible protein PsiE -
  ACI5E1_RS00375 (ACI5E1_00375) - 82436..83068 (-) 633 WP_012262685.1 hydrolase -
  ACI5E1_RS00380 (ACI5E1_00380) - 83123..83467 (-) 345 WP_005595710.1 RidA family protein -
  ACI5E1_RS00385 (ACI5E1_00385) - 83554..84591 (-) 1038 WP_012262686.1 branched-chain amino acid aminotransferase -
  ACI5E1_RS00390 (ACI5E1_00390) grxD 84734..85066 (-) 333 WP_005600046.1 Grx4 family monothiol glutaredoxin -
  ACI5E1_RS00395 (ACI5E1_00395) recR 85138..85743 (-) 606 WP_005618700.1 recombination mediator RecR Machinery gene
  ACI5E1_RS00400 (ACI5E1_00400) - 85814..86143 (-) 330 WP_005600053.1 YbaB/EbfC family nucleoid-associated protein -
  ACI5E1_RS00405 (ACI5E1_00405) - 86312..87169 (-) 858 WP_005595716.1 energy transducer TonB -
  ACI5E1_RS00410 (ACI5E1_00410) exbD 87179..87568 (-) 390 WP_005595717.1 TonB system transport protein ExbD -
  ACI5E1_RS00415 (ACI5E1_00415) exbB 87613..88065 (-) 453 WP_005595719.1 TonB-system energizer ExbB -
  ACI5E1_RS00420 (ACI5E1_00420) glpE 88253..88579 (+) 327 WP_005595720.1 thiosulfate sulfurtransferase GlpE -
  ACI5E1_RS00425 (ACI5E1_00425) - 88623..89468 (+) 846 WP_005603255.1 co-chaperone YbbN -
  ACI5E1_RS00430 (ACI5E1_00430) dhaM 89542..89949 (-) 408 WP_005600064.1 dihydroxyacetone kinase phosphoryl donor subunit DhaM -
  ACI5E1_RS00435 (ACI5E1_00435) dhaL 89958..90584 (-) 627 WP_005600065.1 dihydroxyacetone kinase subunit DhaL -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22182.40 Da        Isoelectric Point: 6.4865

>NTDB_id=961602 ACI5E1_RS00395 WP_005618700.1 85138..85743(-) (recR) [Actinobacillus pleuropneumoniae strain APL2305174E]
MQISPLLENLMEALRALPGVGPKSAQRMAYHLLQRNRSGGINLSKALNEAMTHIGHCRSCRTFTEEDECNICKNPRRQMS
GQLCVVEMPEDIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQSRLENESFHEVILATNPTIEGDATANYIAEM
CRIHNVKVTRIAHGIPVGGSLEMVDGTTLSHSFAGRRDISL

Nucleotide


Download         Length: 606 bp        

>NTDB_id=961602 ACI5E1_RS00395 WP_005618700.1 85138..85743(-) (recR) [Actinobacillus pleuropneumoniae strain APL2305174E]
ATGCAAATTAGCCCTTTACTCGAAAATCTGATGGAAGCCCTACGTGCATTACCCGGCGTCGGTCCGAAATCCGCACAACG
TATGGCGTATCATTTATTGCAACGCAATCGTTCCGGCGGTATCAATTTATCCAAAGCCTTAAATGAAGCGATGACGCATA
TCGGTCATTGCCGTTCTTGCCGTACTTTTACCGAAGAAGACGAATGCAATATTTGTAAAAATCCTCGTCGCCAAATGAGC
GGTCAGCTTTGCGTAGTAGAAATGCCGGAAGATATTCAAGCGATTGAACAAACCGGACAGTTTTCGGGACGTTATTTCGT
ATTAATGGGACATCTTTCACCGCTAGACGGTATCGGACCGAGAGAAATCGGCTTGGATTTGTTACAAAGCCGTTTAGAAA
ACGAATCTTTTCACGAAGTTATTCTAGCTACCAATCCGACCATTGAAGGTGATGCCACCGCCAACTATATTGCGGAAATG
TGCCGCATTCACAACGTGAAAGTAACTCGAATTGCGCATGGGATTCCGGTCGGCGGTTCATTAGAAATGGTGGACGGTAC
GACCCTTTCCCACTCTTTTGCCGGCAGACGAGATATTTCGTTATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(82-172)

RecR protein (RecR_ZnF)

(42-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

42.714

99.005

0.423
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42

99.502

0.418