Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   V8N34_RS09715 Genome accession   NZ_CP149804
Coordinates   2001737..2003104 (-) Length   455 a.a.
NCBI ID   WP_061366867.1    Uniprot ID   A0AAJ2PEW6
Organism   Streptococcus suis strain YA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1996737..2008104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N34_RS09690 (V8N34_09690) - 1997343..1998623 (-) 1281 WP_172059760.1 MFS transporter -
  V8N34_RS09695 (V8N34_09695) - 1998715..1999374 (-) 660 WP_172059758.1 hypothetical protein -
  V8N34_RS09700 (V8N34_09700) - 1999379..1999825 (-) 447 WP_024381190.1 LytTR family DNA-binding domain-containing protein -
  V8N34_RS09705 (V8N34_09705) - 2000003..2000761 (-) 759 WP_013730631.1 TIGR00266 family protein -
  V8N34_RS09710 (V8N34_09710) - 2000969..2001463 (-) 495 WP_318825309.1 carbonic anhydrase -
  V8N34_RS09715 (V8N34_09715) radA 2001737..2003104 (-) 1368 WP_061366867.1 DNA repair protein RadA Machinery gene
  V8N34_RS09720 (V8N34_09720) - 2003111..2003644 (-) 534 WP_024386082.1 histidine phosphatase family protein -
  V8N34_RS09725 (V8N34_09725) - 2003651..2004094 (-) 444 WP_318825308.1 dUTP diphosphatase -
  V8N34_RS09730 (V8N34_09730) - 2004195..2005979 (-) 1785 WP_318825307.1 ABC transporter ATP-binding protein -
  V8N34_RS09735 (V8N34_09735) - 2005980..2007686 (-) 1707 WP_172059754.1 ABC transporter transmembrane domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49885.45 Da        Isoelectric Point: 6.5158

>NTDB_id=961523 V8N34_RS09715 WP_061366867.1 2001737..2003104(-) (radA) [Streptococcus suis strain YA]
MIIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFK

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=961523 V8N34_RS09715 WP_061366867.1 2001737..2003104(-) (radA) [Streptococcus suis strain YA]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTATCTGGGCCGTTGTCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTTAGCCTGACAGGCG
AGAAGACCCGTCCGATGAAGCTCAATGAAGTTTCCTCCATTCAAGTGGCCCGCACCAAGACCAACATGGAAGAGTTCAAC
CGTGTCCTCGGTGGCGGCGTGGTGCCGGGCAGTCTGGTTCTGATCGGAGGTGATCCAGGGATTGGCAAGTCCACCTTGCT
CCTGCAAGTATCCACTCAGCTGTCTACAATTGGCACGGTCCTCTATGTGTCGGGGGAGGAATCTGCCCAGCAGATTAAGC
TCCGTGCCGAGCGTTTGGGCGACATCGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACTGAG
ATTGAGAAAATTAAGCCAGATTTCCTGATTATCGACTCTATCCAGACCATCATGAGCCCTGACATCTCCAGCGTGCAAGG
CTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAGCTTATGCAGATTGCCAAGACCAACAATATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGTACTCTGGCTGGACCTCGGACCTTGGAGCATATGGTAGACACCGTTCTTTATTTTGAGGGC
GAGCGGCAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGTTTCGGTTCTACCAACGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGTTTGGTCGAAGTCCTCAATCCTAGTGAGGTCTTTCTGGAAGAGCGTTTGGACGGGGCGACAGGCTCTG
CTATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCCGAAGTGCAGGCTCTGGTGACGCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGACTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGAGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTCAAGTCAGCAGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTAGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGACAAGCCAACCAACCCACAAGAGTGCTTTATAGGCGAAATCGGTCTGACAGGGGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAACTAGGCTTTACCAAGGTCTATGCCCCTAAAAA
TTCCCTGACAGGAATCAAGGTGCCCAAGGAAATCACTGTTATCGGCGTGACAACCATTGGCGAAGTCCTGCAAAAAGTGT
TTAAGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.372

99.341

0.908
  radA Streptococcus pneumoniae Rx1

91.15

99.341

0.905
  radA Streptococcus pneumoniae D39

91.15

99.341

0.905
  radA Streptococcus pneumoniae R6

91.15

99.341

0.905
  radA Streptococcus pneumoniae TIGR4

91.15

99.341

0.905
  radA Streptococcus mitis SK321

90.929

99.341

0.903
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.56

0.624