Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AABJ45_RS00200 Genome accession   NZ_AP028611
Coordinates   37137..37907 (+) Length   256 a.a.
NCBI ID   WP_000616158.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Sep6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 32137..42907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ45_RS00180 (TKY121527_00310) - 34056..34493 (+) 438 WP_000076479.1 CoA-binding protein -
  AABJ45_RS00185 (TKY121527_00320) - 34534..34815 (+) 282 WP_001827121.1 hypothetical protein -
  AABJ45_RS00190 (TKY121527_00330) - 34812..35822 (-) 1011 WP_000009157.1 YeiH family protein -
  AABJ45_RS00195 (TKY121527_00350) - 35971..37140 (+) 1170 WP_000366342.1 pyridoxal phosphate-dependent aminotransferase -
  AABJ45_RS00200 (TKY121527_00360) recO 37137..37907 (+) 771 WP_000616158.1 DNA repair protein RecO Machinery gene
  AABJ45_RS00205 (TKY121527_00370) plsX 37904..38896 (+) 993 WP_000717454.1 phosphate acyltransferase PlsX -
  AABJ45_RS00210 (TKY121527_00380) - 38902..39135 (+) 234 WP_000136449.1 acyl carrier protein -
  AABJ45_RS00215 (TKY121527_00390) - 39181..39471 (+) 291 Protein_35 transposase family protein -
  AABJ45_RS00220 (TKY121527_00400) blpU 39674..39904 (+) 231 WP_001093077.1 bacteriocin-like peptide BlpU -
  AABJ45_RS00225 - 39907..40032 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  AABJ45_RS00230 (TKY121527_00410) comA 40620..42773 (+) 2154 WP_000668308.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29734.30 Da        Isoelectric Point: 5.6115

>NTDB_id=96152 AABJ45_RS00200 WP_000616158.1 37137..37907(+) (recO) [Streptococcus pneumoniae strain Sep6]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKCMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=96152 AABJ45_RS00200 WP_000616158.1 37137..37907(+) (recO) [Streptococcus pneumoniae strain Sep6]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTTGTCAAAATTTT
TACAGAGCAGGTTGGCAAATGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

98.828

100

0.988

Multiple sequence alignment