Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   V8N34_RS08810 Genome accession   NZ_CP149804
Coordinates   1810863..1812653 (-) Length   596 a.a.
NCBI ID   WP_044678770.1    Uniprot ID   A0A0Z8MVY3
Organism   Streptococcus suis strain YA     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1805863..1817653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N34_RS08785 (V8N34_08785) - 1806182..1806547 (-) 366 WP_002939192.1 Asp23/Gls24 family envelope stress response protein -
  V8N34_RS08790 (V8N34_08790) - 1806670..1807572 (-) 903 WP_002938141.1 ABC transporter permease -
  V8N34_RS08795 (V8N34_08795) opp4B 1807586..1808542 (-) 957 WP_105134825.1 oligopeptide ABC transporter permease -
  V8N34_RS08800 (V8N34_08800) - 1808544..1809485 (-) 942 WP_012027759.1 ATP-binding cassette domain-containing protein -
  V8N34_RS08805 (V8N34_08805) - 1809488..1810486 (-) 999 WP_105134824.1 ABC transporter ATP-binding protein -
  V8N34_RS08810 (V8N34_08810) oppA 1810863..1812653 (-) 1791 WP_044678770.1 oligopeptide ABC transporter substrate-binding protein Regulator
  V8N34_RS08815 (V8N34_08815) pbp3 1812866..1814107 (+) 1242 WP_024383378.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  V8N34_RS08820 (V8N34_08820) sufB 1814381..1815796 (-) 1416 WP_002938151.1 Fe-S cluster assembly protein SufB -
  V8N34_RS08825 (V8N34_08825) sufU 1816146..1816586 (-) 441 WP_172059892.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65683.67 Da        Isoelectric Point: 4.6342

>NTDB_id=961519 V8N34_RS08810 WP_044678770.1 1810863..1812653(-) (oppA) [Streptococcus suis strain YA]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPAEVKQDGTAVSDAQLKYAWVSPTTSSGLLIDELTENTTDST
FGGMVDISMFGYDGDRKLDDSGLAKAEFDVKGKKITVSLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGIRFDDKFLN
IEGMQEFVDGKASDISGIKKVDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTKPKTSSLKIDIVSPDTIVSEMKAGNYDIAEMPVDQLDSYKDASNLNIVGQLESSYEYI
SFNFGKYDEAAGKNVMDENAKMNDVKLRQAIAYAIDTKTAGKSLYNGLYHPAKSLIISFFGDIHDSELEGYSYNPEKAKK
LLDEAGYKDVDGDGIREGKDGKAFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEGKSFYNSVQANDAAID
MYAGGWSTGYDPNPSGLWGPIAAFNMSRFVSDENTKLLEAISSAESFDDKKNVENYKAWQKYAHEQAFAIPTFESEKITA
VNKRVKSYDTKYGSASGTGLAYEGIELTADKGVVAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=961519 V8N34_RS08810 WP_044678770.1 1810863..1812653(-) (oppA) [Streptococcus suis strain YA]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCAGCTGAAGTAAAACAAGACGGAACAGCAGTGTCTGACGCTCAGT
TGAAATACGCATGGGTATCACCAACAACTTCATCAGGTCTCTTGATTGATGAGTTGACTGAAAATACGACTGATTCAACA
TTTGGTGGTATGGTTGACATTTCAATGTTCGGTTACGATGGAGATCGTAAGTTGGACGACTCAGGTCTTGCCAAGGCTGA
ATTTGATGTGAAAGGTAAGAAAATCACAGTCAGCTTGACTGGTAAGGATTACAAGTGGTCAGATGGTGAGCCATTCACAA
TCAACGACTATATCTTTACAATTAAGTCAATGGCAAGCAAAGACTATACAGGTATTCGTTTTGATGATAAATTCTTGAAC
ATTGAAGGTATGCAAGAATTTGTTGATGGAAAAGCATCAGACATCTCTGGTATTAAGAAAGTTGATGACTATACAGTAGA
ATTAACTGTAAAAGAAATGTCACCTTCAATGATGTATGCAGGTGGTGATGTCCCAGCCTATATCCAACCAGAACACATCT
ATAAAGACATCCCTGTTGCAGACTGGGAAAAGAGCGAATACTCACGTACTGCGAAGCTTGTTGGTATGGGCCCGTGGAAG
ATTAAAGAAATTGTTAATGGTGAGTCTATCACTTACGTACCAAACGAATACTTCTTCAAGGGTACGAAACCAAAAACAAG
CTCATTGAAGATTGACATCGTATCTCCTGATACTATTGTTTCTGAAATGAAAGCGGGGAATTATGATATCGCAGAAATGC
CGGTTGATCAGTTAGATTCATATAAGGATGCTTCTAACTTGAATATCGTTGGTCAGTTAGAGTCGTCTTATGAGTATATC
TCGTTTAATTTTGGTAAATATGACGAAGCAGCTGGTAAGAACGTTATGGATGAAAATGCCAAGATGAATGATGTGAAACT
TCGTCAAGCGATTGCCTATGCGATTGATACCAAGACAGCTGGTAAGTCATTATACAACGGTCTTTACCACCCTGCAAAAT
CATTGATTATCTCATTCTTCGGCGATATTCATGATTCAGAGTTGGAAGGCTATTCATACAATCCTGAAAAAGCGAAAAAG
CTTTTGGATGAAGCTGGATACAAAGATGTAGATGGTGATGGTATCCGTGAAGGCAAAGATGGTAAGGCATTCAAGATTAC
CTTTGCGGCTCGTAAACGTACTGAAGCTAACGAAGCGCTTGTACAACAATACATTGCTTGGTGGAAAGAAGTTGGCTTGA
ATGTCGAACTTTACACAGGACGTACAGTTGAAGGTAAGTCGTTCTATAACTCAGTTCAGGCTAATGATGCTGCTATTGAT
ATGTATGCTGGTGGATGGTCAACAGGTTACGATCCAAACCCAAGTGGTCTATGGGGGCCTATCGCAGCCTTCAATATGTC
ACGTTTCGTGTCCGATGAAAACACCAAGTTATTGGAAGCTATCAGCTCAGCAGAGTCGTTTGATGATAAGAAAAACGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTCACGAGCAAGCATTTGCTATTCCAACGTTTGAGTCAGAAAAAATTACTGCT
GTTAATAAACGTGTGAAAAGCTATGATACAAAATACGGCTCAGCTTCGGGTACAGGTCTTGCTTATGAGGGTATCGAATT
GACAGCTGATAAGGGTGTAGTGGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8MVY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

99.497

100

0.995