Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   V8N34_RS08750 Genome accession   NZ_CP149804
Coordinates   1800484..1801218 (-) Length   244 a.a.
NCBI ID   WP_318825354.1    Uniprot ID   A0AAJ2PHJ1
Organism   Streptococcus suis strain YA     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1795484..1806218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N34_RS08725 (V8N34_08725) nusA 1795518..1796660 (-) 1143 WP_004194726.1 transcription termination factor NusA -
  V8N34_RS08730 (V8N34_08730) rimP 1796734..1797204 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  V8N34_RS08735 (V8N34_08735) trmB 1797968..1798606 (-) 639 WP_141604821.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  V8N34_RS08740 (V8N34_08740) - 1798603..1799397 (-) 795 WP_318825355.1 phosphotransferase family protein -
  V8N34_RS08745 (V8N34_08745) - 1799447..1800487 (-) 1041 WP_024408311.1 ABC transporter permease -
  V8N34_RS08750 (V8N34_08750) pptA 1800484..1801218 (-) 735 WP_318825354.1 ABC transporter ATP-binding protein Regulator
  V8N34_RS08755 (V8N34_08755) - 1801281..1801694 (+) 414 WP_024387523.1 HIT family protein -
  V8N34_RS08760 (V8N34_08760) - 1801696..1801998 (+) 303 WP_318825353.1 chemotaxis protein -
  V8N34_RS08765 (V8N34_08765) - 1802264..1803457 (-) 1194 WP_002939198.1 LCP family protein -
  V8N34_RS08770 (V8N34_08770) - 1803454..1803981 (-) 528 WP_002939196.1 GNAT family N-acetyltransferase -
  V8N34_RS08775 (V8N34_08775) tsaE 1803974..1804414 (-) 441 WP_079397089.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  V8N34_RS08780 (V8N34_08780) - 1804515..1806179 (-) 1665 WP_318825352.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26779.09 Da        Isoelectric Point: 4.4004

>NTDB_id=961518 V8N34_RS08750 WP_318825354.1 1800484..1801218(-) (pptA) [Streptococcus suis strain YA]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVERLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLGEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=961518 V8N34_RS08750 WP_318825354.1 1800484..1801218(-) (pptA) [Streptococcus suis strain YA]
ATGTTAGAAGTAAAAAATGTAACTGGAGGATATGTCAATATCCCAGTTTTGAAAGATGTATCTTTTACCGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACCCCCT
ATCAAGGACAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCGCTTGTTAAAACTGTTTCGCTTGGATGAGAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTGTTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGATTTAATCGCTCTTTTGGGGGAAGAAAAATCTAAGGGCACTTCAATCCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTCCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCGCATTTGGTATGGATGGTGCAAGTCTGAATGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

97.951

0.738
  pptA Streptococcus thermophilus LMD-9

73.64

97.951

0.721