Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ACI3MR_RS22535 Genome accession   NZ_CP173600
Coordinates   4443374..4444870 (-) Length   498 a.a.
NCBI ID   WP_001040668.1    Uniprot ID   -
Organism   Escherichia coli strain 98191     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4438374..4449870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3MR_RS22505 (ACI3MR_22510) panM 4438596..4438979 (+) 384 WP_000778785.1 aspartate 1-decarboxylase autocleavage activator PanM -
  ACI3MR_RS22510 (ACI3MR_22515) - 4439019..4439118 (-) 100 Protein_4236 hypothetical protein -
  ACI3MR_RS22515 (ACI3MR_22520) livJ 4439178..4440281 (-) 1104 WP_001021996.1 branched chain amino acid ABC transporter substrate-binding protein LivJ -
  ACI3MR_RS22520 (ACI3MR_22525) rpoH 4440553..4441407 (-) 855 WP_000130217.1 RNA polymerase sigma factor RpoH -
  ACI3MR_RS22525 (ACI3MR_22530) ftsX 4441652..4442710 (-) 1059 WP_001042003.1 permease-like cell division protein FtsX -
  ACI3MR_RS22530 (ACI3MR_22535) ftsE 4442703..4443371 (-) 669 WP_000617723.1 cell division ATP-binding protein FtsE -
  ACI3MR_RS22535 (ACI3MR_22540) pilA 4443374..4444870 (-) 1497 WP_001040668.1 signal recognition particle-docking protein FtsY Machinery gene
  ACI3MR_RS22540 (ACI3MR_22545) rsmD 4445020..4445616 (+) 597 WP_000743193.1 16S rRNA (guanine(966)-N(2))-methyltransferase -
  ACI3MR_RS22545 (ACI3MR_22550) yhhL 4445606..4445875 (+) 270 WP_001295207.1 DUF1145 family protein -
  ACI3MR_RS22550 (ACI3MR_22555) yhhM 4445878..4446237 (-) 360 WP_000042901.1 DUF2500 domain-containing protein -
  ACI3MR_RS22555 (ACI3MR_22560) yhhN 4446378..4447004 (+) 627 WP_000964718.1 lysoplasmalogenase -
  ACI3MR_RS22560 (ACI3MR_22565) zntA 4447078..4449276 (+) 2199 WP_000106527.1 Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase ZntA -
  ACI3MR_RS22565 (ACI3MR_22570) tusA 4449378..4449623 (-) 246 WP_000130621.1 sulfurtransferase TusA -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 54655.50 Da        Isoelectric Point: 4.1560

>NTDB_id=961498 ACI3MR_RS22535 WP_001040668.1 4443374..4444870(-) (pilA) [Escherichia coli strain 98191]
MAKEKKRGFFSWLGFGQKEQTPEKETEVQNEQPVVEEIVQAQEPVKASEQAVEEQPQAHTEAEAETFAADVVEVTEQVAE
SEKAQPEAEVVAQPEPVVEETPVPVAIEREELPLPEDVNAEEVSPEEWQAEAETVEIVEAAEEEAAKEEITDEELEAQAL
AAEAAEEAVMVVPPAEEEQPVEEIAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIAD
VGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKTPFVILMVGVNGVGKTTTIGKLARQFEQ
QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKK
IVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIED
LRPFKADDFIEALFARED

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=961498 ACI3MR_RS22535 WP_001040668.1 4443374..4444870(-) (pilA) [Escherichia coli strain 98191]
ATGGCGAAAGAAAAAAAACGTGGCTTTTTTTCCTGGCTGGGCTTTGGTCAAAAAGAGCAGACCCCGGAAAAAGAGACAGA
AGTTCAGAATGAACAACCGGTTGTAGAAGAAATCGTTCAGGCGCAAGAGCCTGTGAAGGCTTCAGAACAAGCCGTTGAAG
AGCAGCCGCAGGCGCATACTGAGGCCGAGGCGGAAACTTTTGCTGCCGACGTTGTGGAAGTCACTGAACAGGTTGCTGAA
AGTGAAAAAGCGCAGCCTGAAGCGGAAGTCGTTGCACAGCCGGAACCGGTCGTAGAAGAAACGCCGGTGCCAGTGGCTAT
CGAACGTGAAGAGCTGCCGTTGCCGGAAGACGTCAACGCCGAAGAGGTTTCGCCAGAAGAGTGGCAGGCTGAAGCGGAAA
CCGTAGAGATTGTCGAAGCGGCAGAAGAAGAAGCGGCTAAGGAAGAAATCACCGACGAAGAGCTGGAAGCACAGGCGCTG
GCTGCCGAAGCGGCAGAAGAGGCGGTGATGGTAGTTCCTCCGGCAGAAGAAGAGCAGCCGGTTGAAGAAATTGCCCAGGA
GCAAGAAAAACCGACCAAAGAAGGCTTCTTCGCGCGCCTGAAACGCAGCCTGTTAAAAACCAAAGAAAATCTCGGTTCCG
GATTTATCAGCCTGTTCCGCGGTAAAAAAATCGACGATGATCTGTTTGAGGAGCTGGAAGAACAGCTTTTGATCGCCGAT
GTGGGCGTGGAAACCACACGTAAAATAATCACCAATCTGACGGAAGGCGCATCCCGCAAGCAGCTTCGTGATGCCGAGGC
GCTCTATGGCCTGCTGAAAGAAGAGATGGGCGAGATTCTGGCGAAAGTCGATGAGCCGCTGAATGTTGAAGGTAAAACGC
CGTTCGTGATCCTGATGGTGGGCGTCAACGGTGTGGGTAAAACCACGACGATTGGTAAGCTGGCGCGTCAGTTTGAGCAG
CAGGGTAAATCGGTGATGCTGGCGGCGGGTGATACTTTCCGTGCAGCAGCGGTTGAACAGCTTCAGGTCTGGGGTCAGCG
CAACAATATTCCGGTGATTGCCCAGCATACCGGTGCGGATTCCGCCTCTGTTATCTTCGACGCCATTCAGGCTGCGAAGG
CGCGTAATGTTGACGTACTGATTGCCGATACCGCCGGACGCTTGCAGAACAAATCGCACCTGATGGAAGAGCTGAAGAAA
ATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTATGCTGACTATTGATGCCAGCACCGGGCAGAA
CGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCTGTTGGCTTAACCGGCATCACGCTAACGAAACTGGACGGCACGGCGA
AAGGCGGGGTAATTTTCTCGGTGGCTGACCAGTTTGGTATCCCTATCCGCTACATTGGTGTCGGCGAACGTATTGAGGAT
TTGCGTCCGTTTAAGGCGGACGACTTTATAGAGGCACTTTTTGCCCGAGAGGATTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(294-494)

SRP54-type protein, helical bundle domain (SRP54_N)

(211-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

48.571

77.309

0.375