Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   WF513_RS02900 Genome accession   NZ_CP149803
Coordinates   600196..601560 (+) Length   454 a.a.
NCBI ID   WP_339081275.1    Uniprot ID   -
Organism   Pseudomonas sp. TMP9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 595196..606560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WF513_RS02875 (WF513_02875) - 596985..598010 (-) 1026 WP_339081265.1 CNNM domain-containing protein -
  WF513_RS02880 (WF513_02880) mscL 598159..598572 (-) 414 WP_339081267.1 large-conductance mechanosensitive channel protein MscL -
  WF513_RS02885 (WF513_02885) - 598641..599387 (-) 747 WP_339081269.1 EAL domain-containing protein -
  WF513_RS02890 (WF513_02890) - 599521..599763 (+) 243 WP_339081271.1 DUF465 domain-containing protein -
  WF513_RS02895 (WF513_02895) - 599849..600094 (+) 246 WP_339081273.1 DUF465 domain-containing protein -
  WF513_RS02900 (WF513_02900) radA 600196..601560 (+) 1365 WP_339081275.1 DNA repair protein RadA Machinery gene
  WF513_RS02905 (WF513_02905) - 601618..601989 (-) 372 WP_339083381.1 PilZ domain-containing protein -
  WF513_RS02910 (WF513_02910) ppa 602198..602725 (-) 528 WP_339081277.1 inorganic diphosphatase -
  WF513_RS02915 (WF513_02915) - 602802..603641 (-) 840 WP_339081279.1 M90 family metallopeptidase -
  WF513_RS02920 (WF513_02920) - 603752..605344 (+) 1593 WP_339081281.1 protein kinase -
  WF513_RS02925 (WF513_02925) - 605478..605945 (-) 468 WP_339081283.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48847.64 Da        Isoelectric Point: 7.1321

>NTDB_id=961451 WF513_RS02900 WP_339081275.1 600196..601560(+) (radA) [Pseudomonas sp. TMP9]
MAKAKRMYGCTECGATFPKWAGQCGECGVWNTLVETLLEANAVMPNGRAGWAGERVQIKTLAEVSVEEMPRFSTASGELD
RVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRFPALYVTGEESQQQVAMRARRLGLPEDKLKVMTETCIESIIAT
ARIEKPKVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLVRFAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEG
ESDGRLRLLRAVKNRFGAINELGVFGMTDRGLKEVTNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDTSHMAN
PRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVISSLRNKPLPHDLLVFGEVGLSGE
IRPVPSGQERLKEAAKHGFKRAIVPKGNAPKDPPPGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=961451 WF513_RS02900 WP_339081275.1 600196..601560(+) (radA) [Pseudomonas sp. TMP9]
ATGGCCAAGGCCAAGCGTATGTATGGCTGCACCGAGTGTGGCGCGACCTTTCCCAAATGGGCCGGCCAGTGCGGCGAGTG
CGGTGTGTGGAATACCTTGGTTGAGACCCTGCTCGAAGCCAATGCGGTAATGCCCAATGGGCGAGCCGGTTGGGCGGGCG
AGAGGGTCCAAATCAAGACCTTGGCCGAGGTCAGTGTCGAAGAAATGCCGCGTTTCTCCACGGCATCCGGAGAGTTAGAC
CGGGTGCTCGGCGGCGGTCTGGTGGACGGCTCGGTGGTACTGATCGGCGGTGACCCTGGTATCGGCAAATCAACCATCCT
GCTGCAAACCTTGTGCAACATCGCCACGCGCTTCCCTGCGCTATACGTGACGGGCGAAGAATCCCAACAGCAGGTGGCCA
TGCGTGCTCGCCGCTTGGGTTTGCCAGAAGACAAACTCAAGGTCATGACCGAAACTTGCATCGAAAGCATCATCGCCACC
GCGCGCATAGAAAAGCCCAAGGTGATGGTGATCGACTCAATCCAAACCATCTTCACCGAGCAACTGCAATCGGCTCCTGG
TGGCGTCGCCCAGGTGCGCGAGAGTGCGGCATTGCTGGTGCGCTTCGCTAAACAAAGCGGCACGGCGATTTTTCTGGTTG
GTCACGTGACCAAGGAAGGTGCGCTGGCTGGCCCACGCGTGCTCGAACACATGGTCGACACCGTGTTGTATTTCGAGGGT
GAGTCTGACGGTCGCCTGCGATTGCTGCGTGCAGTGAAGAACCGCTTTGGCGCGATCAATGAACTGGGCGTATTCGGCAT
GACCGACCGGGGCCTGAAAGAAGTCACCAACCCCTCGGCGATCTTCCTCACCCGCGCCCAAGAAGAAGTGCCCGGCAGCG
TGGTGATGGCCACTTGGGAAGGAACCCGGCCGATGCTGGTTGAGGTGCAGGCGTTGGTCGATACCAGCCACATGGCCAAC
CCACGGCGGGTGACCTTGGGTTTAGATCAGAATCGACTGGCCATGCTGCTGGCGGTGCTGCACCGGCACGGCGGCATCCC
CACCCACGATCAGGATGTTTTTCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAAACCGCCTCTGACTTGGCGCTCATGG
CGGCGGTGATCTCCAGCTTGCGAAACAAGCCGTTGCCGCATGATCTGTTGGTGTTCGGCGAGGTTGGTTTGTCTGGCGAA
ATTCGCCCGGTGCCGAGCGGGCAGGAGCGTTTGAAGGAGGCGGCGAAACACGGCTTCAAGCGCGCCATCGTGCCCAAGGG
CAATGCGCCAAAGGATCCGCCGCCCGGTTTGCAAGTGATTGCTGTCACGCGGCTGGAACAAGCGCTGGACGCGTTGTTTG
AGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(352-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(79-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.352

100

0.485
  radA Streptococcus mitis SK321

47.692

100

0.478
  radA Streptococcus mitis NCTC 12261

47.473

100

0.476
  radA Streptococcus pneumoniae Rx1

47.473

100

0.476
  radA Streptococcus pneumoniae D39

47.473

100

0.476
  radA Streptococcus pneumoniae R6

47.473

100

0.476
  radA Streptococcus pneumoniae TIGR4

47.473

100

0.476