Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   WKW51_RS16365 Genome accession   NZ_CP149800
Coordinates   3409216..3411444 (+) Length   742 a.a.
NCBI ID   WP_000156637.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB7276     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3404216..3416444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKW51_RS16340 (WKW51_16340) lnt 3404602..3406161 (+) 1560 WP_001203100.1 apolipoprotein N-acyltransferase -
  WKW51_RS16345 (WKW51_16345) - 3406163..3406501 (-) 339 WP_000434938.1 tRNA-binding protein -
  WKW51_RS16350 (WKW51_16350) - 3406646..3406990 (-) 345 WP_000643174.1 hypothetical protein -
  WKW51_RS16355 (WKW51_16355) gspG 3407257..3407838 (-) 582 WP_000865304.1 type II secretion system major pseudopilin GspG -
  WKW51_RS16360 (WKW51_16360) gspF 3407862..3409067 (-) 1206 WP_001112089.1 type II secretion system inner membrane protein GspF -
  WKW51_RS16365 (WKW51_16365) priA 3409216..3411444 (+) 2229 WP_000156637.1 primosomal protein N' Machinery gene
  WKW51_RS16370 (WKW51_16370) - 3411521..3413362 (+) 1842 WP_000008979.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  WKW51_RS16375 (WKW51_16375) - 3413528..3414403 (+) 876 WP_001281765.1 Hsp33 family molecular chaperone HslO -
  WKW51_RS16380 (WKW51_16380) - 3414541..3415152 (+) 612 WP_001105725.1 LysE family translocator -
  WKW51_RS16385 (WKW51_16385) - 3415303..3416259 (+) 957 WP_001107913.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84008.86 Da        Isoelectric Point: 8.6581

>NTDB_id=961434 WKW51_RS16365 WP_000156637.1 3409216..3411444(+) (priA) [Acinetobacter baumannii strain AB7276]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKAQYERAQVGSRVAISFGRQNLIGIITEKVDPQESFTGHFQLKAISELL
DDEPILDEQVLNLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNAEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLIDCTLEPHDFSPAPVQLAQMPLTLNDDQKKATQHVINAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQGCPVILGSATPSIDSYYLVETGKLTSLQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPNHDVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEYKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEATEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=961434 WKW51_RS16365 WP_000156637.1 3409216..3411444(+) (priA) [Acinetobacter baumannii strain AB7276]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCAAGTAGGTTCACGCGTCGCAATTTCATTTGGACGGCAAAACCTGA
TTGGTATCATTACTGAAAAAGTTGACCCACAAGAATCATTTACAGGTCACTTTCAGCTTAAGGCCATTTCTGAACTTTTA
GATGATGAGCCTATTTTAGATGAACAAGTTTTAAATTTATTGACATGGTCAGCACAATATTACCAATTCCCGATTGGTGA
GGTGATGCAGACTGCTTTACCTGCGTTATTGCGTCAGGGCAAACCCATGGATGTTTTATTTCATCTATGGAAAATCATTC
CATGTGACAATGCCGAAGCTTTACTAAAACGTTCAATCAAACAGCAAGATGCTTATCAAATTTTAAAATTACATCCTGCC
GGAACCACTGAAAATATTCTCAATTTAAGTGGTGTAGAAACTGCAACACTTAAAGCACTACAAAAGAAAGGGCTAATAGA
CTGTACACTTGAGCCTCATGACTTTAGCCCAGCACCTGTGCAATTGGCTCAAATGCCACTCACGTTAAATGATGACCAAA
AGAAAGCAACTCAGCACGTCATTAATGCACAGCATCAATACCAAGCATTTTTACTAGATGGCTTAACTGGAAGTGGTAAA
ACTGAAGTTTATTTGCACATCATGCATGAGGTGCTAAAGCAAGGTAAGCAAGTACTGGTGTTAGTGCCTGAAATTGGTTT
AACCCCTCAAACTATTTCGCGCTTTAAGTCTCGTTTTAACTGCGACATTGCTTTATTACATTCAGGCTTAAATGACTCTA
AACGCTTACAAGCTTGGCAACAGGCACAAACTGGTAAAGCATCTATTATTTTAGGGACTCGCTCAGCCATTTATACACCG
CTGCCACGATTGGGCCTCATCATTTTAGATGAAGAACATGATCTGTCTTATAAGCAACAAGAAGGCTTCCGTTACCATGC
CCGTGATGTCGCGCTTTATCGGGGCCACTTACAAGGCTGCCCTGTTATTTTAGGTTCGGCGACTCCAAGTATCGACAGTT
ATTACTTAGTAGAAACTGGCAAGTTAACTTCACTGCAACTTAACCAACGTGCAGGCCATGCGCTTTTACCTAAAATGCAT
TTGATTGACCTTAAAATTGTCAAAAAGCAGCATGGTATTAGTCAGCCTTTAATCGAGCAGATTAAAAATACCCTAGCAAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGACGTGGTTATGCACCTGTATTGGTTTGTGAAAGCTGTGGATGGCAAGCGA
ATTGTCCACATTGTGATGCACATTTTACGTTGCACACTCAGCCCTACTCTTACTTACATTGTCACCACTGTGGCACCGTT
CATCGCCTGCCAGACCACTGCCCTGAATGTCAGCAAAAGAGCCTCAAAACTTTAGGTGCTGGCACAGCCAAGGTTGAAGA
GCATTTACAAGAATTATTCCCAAATCATGATGTGATTCGGGTCGATCGTGACAGCACCAGCCGAGTCGGTAGCTGGCAAA
AAATTTATGATCGCATTCAACAAAATAAACCTTCGATTTTGCTCGGTACGCAAATGTTGGCAAAAGGTCACCATTTTCCG
CATGTGACTCTGGTTGCTATTTTAGACATCGATGCAGGTTTATTGAGTGTCGATATTCGGGCGCCAGAACGTACTGCTCA
ATTGATTGTACAAGTGGCTGGTCGTGCAGGTCGTGGAGAATACAAAGGTCATGTTTATTTACAAACATTAAGGCCAGATC
ATCCTTTACTCACCACACTCATCGAAAAAGATTATCGGGCAGTCGCGAAACAAACATTGGCTGAGCGTAAAGTTGCATTA
CTGCCGCCTTATCGCTATGCCGTACTTATACGCGCTGAATCGAAAGATCGCGACTATACCTTGCATTTTTTAAATGAAGC
TACCGAGCAACTTCGCCAAATTGCAGGTGACATTGTTGATATCTGGGGACCAATTCCAGCGCCAATGGAACGTAAAGCGG
GACGTTACCGCGCACATATGGTGATTTTGTCTGCTGACCGCGCTCGTCTGCATTTTTACTTAAGACAATGGTGGGCTCAA
TTGGTCCATGCGCCTAGACAGCATCAACTCAGACTCTCAATTGATGTTGACCCGCAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

Type III restriction enzyme, res subunit (ResIII)

(208-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.035

100

0.97