Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   WKW51_RS01630 Genome accession   NZ_CP149800
Coordinates   342557..343084 (+) Length   175 a.a.
NCBI ID   WP_000695066.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB7276     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 337557..348084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKW51_RS01615 (WKW51_01615) pilM 340110..341168 (+) 1059 WP_031949829.1 pilus assembly protein PilM Machinery gene
  WKW51_RS01620 (WKW51_01620) pilN 341168..341809 (+) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  WKW51_RS01625 (WKW51_01625) pilO 341806..342546 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  WKW51_RS01630 (WKW51_01630) pilP 342557..343084 (+) 528 WP_000695066.1 pilus assembly protein PilP Machinery gene
  WKW51_RS01635 (WKW51_01635) pilQ 343147..345312 (+) 2166 WP_001017031.1 type IV pilus secretin PilQ Machinery gene
  WKW51_RS01640 (WKW51_01640) aroK 345324..345893 (+) 570 WP_000643712.1 shikimate kinase AroK -
  WKW51_RS01645 (WKW51_01645) aroB 345922..347004 (+) 1083 WP_001193995.1 3-dehydroquinate synthase -
  WKW51_RS01650 (WKW51_01650) - 347020..347895 (+) 876 WP_000218804.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19518.77 Da        Isoelectric Point: 9.4004

>NTDB_id=961405 WKW51_RS01630 WP_000695066.1 342557..343084(+) (pilP) [Acinetobacter baumannii strain AB7276]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIRPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=961405 WKW51_RS01630 WP_000695066.1 342557..343084(+) (pilP) [Acinetobacter baumannii strain AB7276]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTTGCTGCCGAGCTCAAGATTATGGCGGGAAAACGA
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATCACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCGGATGGTCGAGAAGGC
TATGTCGAAAGACCGAGAACCTTGGTCTTGATTAGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

99.429

100

0.994
  comL Acinetobacter baylyi ADP1

71.264

99.429

0.709