Detailed information NTG0961300

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACI3MB_RS14460
• Genome accession: NZ_CP173591
• Coordinates: 2680291..2681283 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 98193
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2675291..2686283

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI3MB_RS14440 (ACI3MB_14445)	otnK	2676066..2677328 (+)	1263	WP_072649794.1	3-oxo-tetronate kinase	-
ACI3MB_RS14445 (ACI3MB_14450)	ygbL	2677325..2677963 (+)	639	WP_001278994.1	aldolase	-
ACI3MB_RS14450 (ACI3MB_14455)	ygbM	2677968..2678744 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ACI3MB_RS14455 (ACI3MB_14460)	ygbN	2678833..2680197 (+)	1365	WP_000104441.1	GntP family transporter	-
ACI3MB_RS14460 (ACI3MB_14465)	rpoS	2680291..2681283 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACI3MB_RS14465 (ACI3MB_14470)	nlpD	2681346..2682440 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ACI3MB_RS14470 (ACI3MB_14475)	pcm	2682625..2683251 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACI3MB_RS14475 (ACI3MB_14480)	surE	2683245..2684006 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACI3MB_RS14480 (ACI3MB_14485)	truD	2683987..2685036 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACI3MB_RS14485 (ACI3MB_14490)	ispF	2685033..2685512 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACI3MB_RS14490 (ACI3MB_14495)	ispD	2685512..2686222 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=961300 ACI3MB_RS14460 WP_000081550.1 2680291..2681283(-) (rpoS) [Escherichia coli strain 98193]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=961300 ACI3MB_RS14460 WP_000081550.1 2680291..2681283(-) (rpoS) [Escherichia coli strain 98193]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715