Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABXS81_RS01040 Genome accession   NZ_AP026369
Coordinates   220943..222289 (-) Length   448 a.a.
NCBI ID   WP_353662365.1    Uniprot ID   -
Organism   Hydrogenimonas sp. SS33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 215943..227289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXS81_RS01000 - 216727..217320 (+) 594 WP_353662357.1 ankyrin repeat domain-containing protein -
  ABXS81_RS01005 thiS 217317..217517 (+) 201 WP_353662358.1 sulfur carrier protein ThiS -
  ABXS81_RS01010 acpS 217494..217862 (-) 369 WP_353662359.1 holo-ACP synthase -
  ABXS81_RS01015 fliL 217859..218392 (-) 534 WP_353662360.1 flagellar basal body-associated protein FliL -
  ABXS81_RS01020 - 218506..219312 (+) 807 WP_353662361.1 ABC transporter permease -
  ABXS81_RS01025 - 219520..219798 (-) 279 WP_353662362.1 hypothetical protein -
  ABXS81_RS01030 - 219864..220418 (+) 555 WP_353662363.1 CDP-alcohol phosphatidyltransferase family protein -
  ABXS81_RS01035 - 220429..220698 (-) 270 WP_353662364.1 hypothetical protein -
  ABXS81_RS01040 radA 220943..222289 (-) 1347 WP_353662365.1 DNA repair protein RadA Machinery gene
  ABXS81_RS01045 ftsY 222651..223538 (-) 888 Protein_200 signal recognition particle-docking protein FtsY -
  ABXS81_RS01050 - 223540..224124 (-) 585 WP_353662366.1 TlpA family protein disulfide reductase -
  ABXS81_RS01055 - 224177..224770 (+) 594 WP_353662367.1 5-formyltetrahydrofolate cyclo-ligase -
  ABXS81_RS01060 rny 224730..226262 (+) 1533 WP_353663239.1 ribonuclease Y -
  ABXS81_RS01065 - 226901..227209 (+) 309 WP_353662368.1 hypothetical protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 48732.31 Da        Isoelectric Point: 6.7546

>NTDB_id=96107 ABXS81_RS01040 WP_353662365.1 220943..222289(-) (radA) [Hydrogenimonas sp. SS33]
MAKKKSLYECQACGMQSPRWMGKCPNCGAWESFVELTAQQQKVLNEISKSQTAAAHATPITQIEEEEVSRFTSGDDELDL
VLGGGIVPGSLVLIGGSPGIGKSTLLLKIGGNLAALGKKILYVSGEESGGQIKMRANRLGANHDNLYLLGEIRLESVMAE
VERNAYDLVIVDSIQTLYAEAVPSAPGSVTQVRTITFDLMRLAKEKQIPIFIIGHITKEGSIAGPRVLEHMVDTVLYFEG
DASREIRMLRSFKNRFGSTSEVGIFEMTEAGLTSAKNIASKFFSRGKPQAGSAVTVIMEGSRPLVIEVQALVADSGYGNP
KRSTTGYDASRLTMLLALLEKKLDLPFGQYDVFVNIAGGIKITEPAADLAIIAAIISSFRNRPLSDESVFIGEVSLIGDI
REVFHLEQRLREAHTLGFTKAIVPRKPSFKTPMKCFVAEEVAKVVEWM

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=96107 ABXS81_RS01040 WP_353662365.1 220943..222289(-) (radA) [Hydrogenimonas sp. SS33]
ATGGCTAAGAAAAAGAGTCTCTACGAATGCCAGGCCTGCGGGATGCAGAGCCCACGGTGGATGGGCAAATGCCCCAACTG
CGGGGCATGGGAGAGTTTCGTCGAACTTACGGCCCAACAGCAGAAAGTCCTGAACGAAATCTCCAAAAGCCAAACCGCCG
CGGCCCATGCCACCCCCATCACCCAGATCGAAGAGGAGGAGGTCTCCCGCTTCACAAGCGGCGACGACGAGCTGGACCTG
GTGCTGGGAGGCGGCATCGTCCCGGGGTCGCTGGTGCTCATCGGCGGAAGCCCGGGGATCGGCAAGTCGACGCTGCTGCT
CAAAATCGGGGGAAACCTGGCGGCGCTGGGGAAAAAGATCCTCTACGTCAGCGGTGAGGAGTCGGGCGGGCAGATCAAGA
TGCGGGCCAACCGCCTGGGCGCCAACCACGACAACCTCTACCTGCTGGGGGAGATCCGTCTGGAGAGCGTCATGGCGGAG
GTGGAGCGCAACGCCTACGACCTGGTCATCGTCGACTCCATCCAGACGCTCTATGCCGAAGCGGTCCCCTCGGCGCCCGG
CAGCGTCACCCAGGTACGCACCATCACCTTCGACCTGATGCGCCTGGCCAAAGAGAAGCAGATTCCCATCTTCATCATCG
GCCATATCACCAAGGAGGGCTCCATCGCGGGCCCGCGGGTGCTGGAGCATATGGTCGACACGGTTCTCTATTTCGAGGGC
GATGCCAGCCGGGAGATTCGGATGCTGAGAAGCTTCAAAAACCGGTTCGGCAGCACCAGCGAGGTGGGCATCTTCGAAAT
GACCGAAGCGGGCCTCACCAGCGCCAAGAATATCGCCTCCAAATTCTTCAGCCGCGGCAAGCCCCAGGCCGGCAGCGCCG
TCACCGTCATCATGGAGGGGTCGCGCCCGCTGGTCATCGAAGTCCAGGCGCTGGTTGCCGACAGCGGGTACGGCAACCCG
AAACGCTCCACCACCGGCTACGACGCCAGCCGCCTGACGATGCTGCTGGCCCTTCTTGAGAAGAAGCTGGACCTCCCCTT
CGGGCAGTACGACGTTTTCGTCAACATCGCGGGAGGCATCAAGATCACCGAGCCGGCGGCGGACCTGGCCATCATCGCCG
CCATCATCAGCTCCTTCCGCAACCGGCCGCTGAGCGACGAAAGCGTCTTTATCGGGGAAGTGAGCCTCATCGGAGACATC
CGTGAGGTCTTCCACCTCGAACAGCGCCTCAGAGAAGCCCACACCCTGGGTTTCACCAAAGCGATCGTTCCCAGAAAACC
CTCTTTCAAAACGCCGATGAAATGTTTCGTCGCCGAAGAGGTGGCCAAAGTGGTCGAGTGGATGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-426)

AAA domain (AAA_25)

(65-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.82

95.313

0.484
  radA Streptococcus pneumoniae Rx1

49.65

95.759

0.475
  radA Streptococcus pneumoniae D39

49.65

95.759

0.475
  radA Streptococcus pneumoniae R6

49.65

95.759

0.475
  radA Streptococcus pneumoniae TIGR4

49.65

95.759

0.475
  radA Streptococcus mitis SK321

49.65

95.759

0.475
  radA Streptococcus mitis NCTC 12261

49.417

95.759

0.473

Multiple sequence alignment