Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AABA16_RS05585 Genome accession   NZ_AP028610
Coordinates   1104625..1106292 (-) Length   555 a.a.
NCBI ID   WP_000923571.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Sep5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1099625..1111292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA16_RS05555 - 1099909..1100712 (-) 804 Protein_1097 IS5 family transposase -
  AABA16_RS05560 (TKY124516_10900) - 1100720..1101022 (-) 303 WP_000590579.1 PTS sugar transporter subunit IIB -
  AABA16_RS05565 (TKY124516_10910) - 1101060..1101536 (-) 477 WP_000242215.1 PTS sugar transporter subunit IIA -
  AABA16_RS05570 (TKY124516_10920) - 1101715..1101912 (+) 198 WP_000693382.1 hypothetical protein -
  AABA16_RS05575 (TKY124516_10930) lepA 1101993..1103816 (-) 1824 WP_001047204.1 translation elongation factor 4 -
  AABA16_RS05580 (TKY124516_10940) - 1103895..1104623 (-) 729 WP_000133339.1 metallophosphoesterase family protein -
  AABA16_RS05585 (TKY124516_10950) recN 1104625..1106292 (-) 1668 WP_000923571.1 DNA repair protein RecN Machinery gene
  AABA16_RS05590 (TKY124516_10960) - 1106299..1106730 (-) 432 WP_001034412.1 arginine repressor -
  AABA16_RS05595 (TKY124516_10970) - 1106723..1107538 (-) 816 WP_001041073.1 TlyA family RNA methyltransferase -
  AABA16_RS05600 (TKY124516_10980) - 1107531..1108406 (-) 876 WP_000743809.1 polyprenyl synthetase family protein -
  AABA16_RS05605 (TKY124516_10990) - 1108403..1108615 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  AABA16_RS05610 (TKY124516_11000) xseA 1108593..1109933 (-) 1341 WP_000417469.1 exodeoxyribonuclease VII large subunit -
  AABA16_RS05615 (TKY124516_11010) udk 1110061..1110699 (-) 639 WP_001181378.1 uridine kinase -
  AABA16_RS05620 (TKY124516_11020) - 1110807..1111109 (-) 303 WP_000985087.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62850.32 Da        Isoelectric Point: 4.6232

>NTDB_id=96082 AABA16_RS05585 WP_000923571.1 1104625..1106292(-) (recN) [Streptococcus pneumoniae strain Sep5]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QYGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDMTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=96082 AABA16_RS05585 WP_000923571.1 1104625..1106292(-) (recN) [Streptococcus pneumoniae strain Sep5]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGCCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCTATGAATGACATGGAAAGTGTCGAAGAGTATGATCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTGATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCTAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATGAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGTATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTTTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACAGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATATGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.782

100

0.438

Multiple sequence alignment