Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACI3ME_RS21935 Genome accession   NZ_CP173554
Coordinates   3826499..3827014 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 98203     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3821499..3832014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3ME_RS21890 (ACI3ME_21900) csrA 3822356..3822541 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  ACI3ME_RS21920 (ACI3ME_21930) yqaB 3823729..3824295 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  ACI3ME_RS21925 (ACI3ME_21935) yqaA 3824292..3824720 (+) 429 WP_001287454.1 YqaA family protein -
  ACI3ME_RS21930 (ACI3ME_21940) gshA 3824793..3826349 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  ACI3ME_RS21935 (ACI3ME_21945) luxS 3826499..3827014 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  ACI3ME_RS21940 (ACI3ME_21950) emrB 3827078..3828616 (-) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  ACI3ME_RS21945 (ACI3ME_21955) emrA 3828633..3829805 (-) 1173 WP_022646013.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  ACI3ME_RS21950 (ACI3ME_21960) emrR 3829932..3830462 (-) 531 WP_000378441.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  ACI3ME_RS21955 (ACI3ME_21965) ygaH 3830553..3830888 (-) 336 WP_000119759.1 L-valine transporter subunit YgaH -
  ACI3ME_RS21960 (ACI3ME_21970) ygaZ 3830878..3831615 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=960654 ACI3ME_RS21935 WP_001130211.1 3826499..3827014(+) (luxS) [Escherichia coli strain 98203]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=960654 ACI3ME_RS21935 WP_001130211.1 3826499..3827014(+) (luxS) [Escherichia coli strain 98203]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731