Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   ACI3ME_RS20155 Genome accession   NZ_CP173554
Coordinates   3468670..3469890 (+) Length   406 a.a.
NCBI ID   WP_001735713.1    Uniprot ID   -
Organism   Escherichia coli strain 98203     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3463670..3474890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3ME_RS20140 (ACI3ME_20150) rfbA 3463813..3464691 (+) 879 WP_001556223.1 glucose-1-phosphate thymidylyltransferase RfbA -
  ACI3ME_RS20145 (ACI3ME_20155) rfbC 3464758..3465309 (+) 552 WP_021526989.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  ACI3ME_RS20150 (ACI3ME_20160) - 3465359..3467506 (+) 2148 WP_000281770.1 capsular polysaccharide biosynthesis protein -
  ACI3ME_RS20155 (ACI3ME_20165) kpsS 3468670..3469890 (+) 1221 WP_001735713.1 capsule biosynthesis protein Regulator
  ACI3ME_RS20160 (ACI3ME_20170) - 3469916..3470146 (-) 231 Protein_3206 hypothetical protein -
  ACI3ME_RS20165 (ACI3ME_20175) - 3470252..3470428 (-) 177 WP_000839288.1 DUF957 domain-containing protein -
  ACI3ME_RS20170 (ACI3ME_20180) - 3470445..3470881 (-) 437 Protein_3208 DUF5983 family protein -
  ACI3ME_RS20175 (ACI3ME_20185) - 3470878..3471252 (-) 375 WP_000854765.1 TA system toxin CbtA family protein -
  ACI3ME_RS20180 (ACI3ME_20190) - 3471342..3471710 (-) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ACI3ME_RS20185 (ACI3ME_20195) - 3471873..3472094 (-) 222 WP_001735710.1 DUF987 domain-containing protein -
  ACI3ME_RS20190 (ACI3ME_20200) radC 3472163..3472639 (-) 477 WP_001186725.1 DNA repair protein RadC Machinery gene
  ACI3ME_RS20195 (ACI3ME_20205) - 3472655..3473140 (-) 486 WP_001735709.1 antirestriction protein -
  ACI3ME_RS20200 (ACI3ME_20210) - 3473195..3474013 (-) 819 WP_016231181.1 DUF932 domain-containing protein -
  ACI3ME_RS20205 (ACI3ME_20215) - 3474131..3474326 (-) 196 Protein_3215 DUF905 family protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 48421.92 Da        Isoelectric Point: 10.1710

>NTDB_id=960645 ACI3ME_RS20155 WP_001735713.1 3468670..3469890(+) (kpsS) [Escherichia coli strain 98203]
MKNNALSILLSGKKYLLLQGPMGPFFNDIAEWLESLGRNAVNVVFNGGDRFYCRHRHYLAYYQTPKEFPGWLRDIHRQFD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEDGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSAM
KRIGHAMWYYLMGWHYRHEFTRYRHHKSFSPWYEARCWGRAYWRKLFYKIMQRNVLARLVNDLDQRYYLVILQVYNDSQI
RNHSNYNDVRDYINEVVYSFSHKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTVGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFREYLLMKTQINAVYYGVKSKSNRRSA
FLNGSR

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=960645 ACI3ME_RS20155 WP_001735713.1 3468670..3469890(+) (kpsS) [Escherichia coli strain 98203]
ATGAAAAATAATGCTCTGAGCATTTTATTATCTGGTAAAAAATATCTGCTATTGCAGGGACCGATGGGACCTTTCTTCAA
TGATATTGCCGAGTGGTTAGAGTCATTAGGTCGTAACGCTGTGAATGTTGTATTCAATGGAGGGGATCGTTTTTACTGCC
GTCATCGACACTATCTGGCTTATTACCAAACGCCGAAAGAATTTCCTGGTTGGTTACGAGATATCCACCGGCAATTTGAC
TTTGATACCATTCTCTGTTTTGGTGACTGCCGTCCATTGCACAAAGAAGCAAAACGTTGGGCGAAGTCTAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGTCCGCAATTTATTACTGTTGAAGAGGACGGTGTAAACGCGTATTCATCGC
TGCCGCGCGATCCTGACTTTTATCGTAAATTACCAGATATGCCTGCACCACATGTTGAGAACTTAAAACCCTCGGCGATG
AAACGTATTGGTCATGCAATGTGGTATTACCTGATGGGATGGCATTACCGACATGAATTCACTCGCTACCGTCATCACAA
ATCATTTTCTCCTTGGTATGAGGCTCGTTGCTGGGGGCGTGCGTACTGGCGTAAGCTATTTTACAAAATAATGCAACGTA
ACGTATTGGCTCGGTTAGTGAATGATCTGGACCAACGTTACTATCTTGTTATTTTACAAGTTTATAATGATAGCCAAATT
CGTAATCACAGTAATTATAATGATGTGCGTGATTATATTAACGAAGTTGTATATTCATTTTCGCATAAGGCACCGAAAGA
GAGTTATTTGGTGATCAAACACCATCCGATGGATCGCGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGCGAGCGAGTCATATACGTACACGATCTCCCAATGCCGGAATTATTACGCCATGCAAAAGCGGTTGTG
ACAATTAACAGTACAGTGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGTAATGCTCTGTACGACAT
CAAGGGGTTGACGTATCAAGGGCATTTGCACCAATTCTGGCAGGCCGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGTGAATATTTATTGATGAAGACGCAAATTAATGCTGTTTATTATGGTGTAAAATCAAAAAGCAATAGAAGGTCCGCA
TTCCTAAACGGTAGCAGATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

95.813

0.382