Detailed information NTG0960460

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: WKI55_RS21060
• Genome accession: NZ_CP149651
• Coordinates: 4094858..4095970 (+)
• Length: 370 a.a.
• NCBI ID: WP_053285270.1
• Uniprot ID: A0A411A1C1
• Organism: Bacillus velezensis strain MJ01
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 4089858..4100970

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WKI55_RS21035 (WKI55_21035)	rnpA	4090573..4090923 (-)	351	WP_004392944.1	ribonuclease P protein component	-
WKI55_RS21040 (WKI55_21040)	rpmH	4091075..4091209 (-)	135	WP_003178075.1	50S ribosomal protein L34	-
WKI55_RS21045 (WKI55_21045)	dnaA	4091831..4093171 (+)	1341	WP_004392913.1	chromosomal replication initiator protein DnaA	-
WKI55_RS21050 (WKI55_21050)	dnaN	4093356..4094492 (+)	1137	WP_007409909.1	DNA polymerase III subunit beta	-
WKI55_RS21055 (WKI55_21055)	rlbA	4094627..4094842 (+)	216	WP_004392910.1	ribosome maturation protein RlbA	-
WKI55_RS21060 (WKI55_21060)	recF	4094858..4095970 (+)	1113	WP_053285270.1	DNA replication/repair protein RecF	Machinery gene
WKI55_RS21065 (WKI55_21065)	-	4095988..4096233 (+)	246	WP_004392908.1	extracellular matrix/biofilm biosynthesis regulator RemA family protein	-
WKI55_RS21070 (WKI55_21070)	gyrB	4096293..4098209 (+)	1917	WP_014720600.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
WKI55_RS21075 (WKI55_21075)	gyrA	4098425..4100884 (+)	2460	WP_025650119.1	DNA gyrase subunit A	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42429.38 Da
• Isoelectric Point: 7.3309

>NTDB_id=960460 WKI55_RS21060 WP_053285270.1 4094858..4095970(+) (recF) [Bacillus velezensis strain MJ01]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKNLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide

• Length: 1113 bp

>NTDB_id=960460 WKI55_RS21060 WP_053285270.1 4094858..4095970(+) (recF) [Bacillus velezensis strain MJ01]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTGAGGAGGAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAAATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-348)

3D structure

• AlphaFold DB: A0A411A1C1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	94.054	100	0.941