Detailed information NTG0960458

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACI3M5_RS15620
• Genome accession: NZ_CP173544
• Coordinates: 2682727..2683719 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 98206
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2677727..2688719

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI3M5_RS15600 (ACI3M5_15595)	otnK	2678502..2679764 (+)	1263	WP_000590392.1	3-oxo-tetronate kinase	-
ACI3M5_RS15605 (ACI3M5_15600)	ygbL	2679761..2680399 (+)	639	WP_001278994.1	aldolase	-
ACI3M5_RS15610 (ACI3M5_15605)	ygbM	2680404..2681180 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
ACI3M5_RS15615 (ACI3M5_15610)	ygbN	2681269..2682633 (+)	1365	WP_000104456.1	GntP family transporter	-
ACI3M5_RS15620 (ACI3M5_15615)	rpoS	2682727..2683719 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACI3M5_RS15625 (ACI3M5_15620)	nlpD	2683782..2684876 (-)	1095	WP_321575577.1	murein hydrolase activator NlpD	-
ACI3M5_RS15630 (ACI3M5_15625)	pcm	2685061..2685687 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACI3M5_RS15635 (ACI3M5_15630)	surE	2685681..2686442 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACI3M5_RS15640 (ACI3M5_15635)	truD	2686423..2687472 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACI3M5_RS15645 (ACI3M5_15640)	ispF	2687469..2687948 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACI3M5_RS15650 (ACI3M5_15645)	ispD	2687948..2688658 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=960458 ACI3M5_RS15620 WP_000081550.1 2682727..2683719(-) (rpoS) [Escherichia coli strain 98206]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=960458 ACI3M5_RS15620 WP_000081550.1 2682727..2683719(-) (rpoS) [Escherichia coli strain 98206]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715