Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   WKI55_RS12835 Genome accession   NZ_CP149651
Coordinates   2526552..2527319 (-) Length   255 a.a.
NCBI ID   WP_017418171.1    Uniprot ID   -
Organism   Bacillus velezensis strain MJ01     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2521552..2532319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKI55_RS12815 (WKI55_12815) - 2521755..2522567 (-) 813 WP_017418169.1 pyruvate, water dikinase regulatory protein -
  WKI55_RS12820 (WKI55_12820) ccpN 2522593..2523231 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  WKI55_RS12825 (WKI55_12825) glyS 2523331..2525370 (-) 2040 WP_017418170.1 glycine--tRNA ligase subunit beta -
  WKI55_RS12830 (WKI55_12830) glyQ 2525363..2526250 (-) 888 WP_016938921.1 glycine--tRNA ligase subunit alpha -
  WKI55_RS12835 (WKI55_12835) recO 2526552..2527319 (-) 768 WP_017418171.1 DNA repair protein RecO Machinery gene
  WKI55_RS12840 (WKI55_12840) - 2527356..2527499 (-) 144 WP_007408286.1 YqzL family protein -
  WKI55_RS12845 (WKI55_12845) era 2527655..2528560 (-) 906 WP_014470680.1 GTPase Era -
  WKI55_RS12850 (WKI55_12850) - 2528541..2528951 (-) 411 WP_017418172.1 cytidine deaminase -
  WKI55_RS12855 (WKI55_12855) - 2529075..2529449 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  WKI55_RS12860 (WKI55_12860) ybeY 2529430..2529903 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  WKI55_RS12865 (WKI55_12865) - 2529904..2532036 (-) 2133 WP_014418406.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29319.94 Da        Isoelectric Point: 8.5625

>NTDB_id=960433 WKI55_RS12835 WP_017418171.1 2526552..2527319(-) (recO) [Bacillus velezensis strain MJ01]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGNVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=960433 WKI55_RS12835 WP_017418171.1 2526552..2527319(-) (recO) [Bacillus velezensis strain MJ01]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCTGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAACGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894