NTDB

Overview

Name	recF	Type	Machinery gene
Locus tag	WKI56_RS20215	Genome accession	NZ_CP149650
Coordinates	3984445..3985557 (+)	Length	370 a.a.
NCBI ID	WP_053285270.1	Uniprot ID	A0A411A1C1
Organism	Bacillus velezensis strain MJ02
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3979445..3990557

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WKI56_RS20190 (WKI56_20190)	rnpA	3980160..3980510 (-)	351	WP_004392944.1	ribonuclease P protein component	-
WKI56_RS20195 (WKI56_20195)	rpmH	3980663..3980797 (-)	135	WP_003178075.1	50S ribosomal protein L34	-
WKI56_RS20200 (WKI56_20200)	dnaA	3981418..3982758 (+)	1341	WP_004392913.1	chromosomal replication initiator protein DnaA	-
WKI56_RS20205 (WKI56_20205)	dnaN	3982943..3984079 (+)	1137	WP_007409909.1	DNA polymerase III subunit beta	-
WKI56_RS20210 (WKI56_20210)	rlbA	3984214..3984429 (+)	216	WP_004392910.1	ribosome maturation protein RlbA	-
WKI56_RS20215 (WKI56_20215)	recF	3984445..3985557 (+)	1113	WP_053285270.1	DNA replication/repair protein RecF	Machinery gene
WKI56_RS20220 (WKI56_20220)	-	3985575..3985820 (+)	246	WP_004392908.1	extracellular matrix/biofilm biosynthesis regulator RemA family protein	-
WKI56_RS20225 (WKI56_20225)	gyrB	3985877..3987793 (+)	1917	WP_014720600.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
WKI56_RS20230 (WKI56_20230)	gyrA	3988009..3990468 (+)	2460	WP_025650119.1	DNA gyrase subunit A	-

Sequence

Protein

Download Length: 370 a.a. Molecular weight: 42429.38 Da Isoelectric Point: 7.3309

                                >NTDB_id=960390 WKI56_RS20215 WP_053285270.1 3984445..3985557(+) (recF) [Bacillus velezensis strain MJ02]

MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD

IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR

NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKNLSKI

GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS

ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide

Download Length: 1113 bp

                                >NTDB_id=960390 WKI56_RS20215 WP_053285270.1 3984445..3985557(+) (recF) [Bacillus velezensis strain MJ02]

TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT

GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA

CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC

ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA

TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTGAGGAGGAGAT

TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG

AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA

AGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA

TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAAATTTGTCGAAAATA

GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG

GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT

CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC

GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT

GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A411A1C1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
recF	Bacillus subtilis subsp. subtilis str. 168	94.054	100	0.941

Detailed information NTG0960390