Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   WKI56_RS12195 Genome accession   NZ_CP149650
Coordinates   2452925..2453692 (-) Length   255 a.a.
NCBI ID   WP_106067885.1    Uniprot ID   -
Organism   Bacillus velezensis strain MJ02     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2447925..2458692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKI56_RS12175 (WKI56_12175) - 2448128..2448940 (-) 813 WP_017418169.1 pyruvate, water dikinase regulatory protein -
  WKI56_RS12180 (WKI56_12180) ccpN 2448966..2449604 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  WKI56_RS12185 (WKI56_12185) glyS 2449704..2451743 (-) 2040 WP_017418170.1 glycine--tRNA ligase subunit beta -
  WKI56_RS12190 (WKI56_12190) glyQ 2451736..2452623 (-) 888 WP_106067886.1 glycine--tRNA ligase subunit alpha -
  WKI56_RS12195 (WKI56_12195) recO 2452925..2453692 (-) 768 WP_106067885.1 DNA repair protein RecO Machinery gene
  WKI56_RS12200 (WKI56_12200) - 2453729..2453872 (-) 144 WP_007408286.1 YqzL family protein -
  WKI56_RS12205 (WKI56_12205) era 2454027..2454931 (-) 905 Protein_2363 GTPase Era -
  WKI56_RS12210 (WKI56_12210) - 2454912..2455322 (-) 411 WP_013352920.1 cytidine deaminase -
  WKI56_RS12215 (WKI56_12215) - 2455445..2455819 (-) 375 WP_014470681.1 diacylglycerol kinase family protein -
  WKI56_RS12220 (WKI56_12220) ybeY 2455800..2456273 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  WKI56_RS12225 (WKI56_12225) - 2456274..2458406 (-) 2133 WP_065180881.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29329.00 Da        Isoelectric Point: 9.0171

>NTDB_id=960362 WKI56_RS12195 WP_106067885.1 2452925..2453692(-) (recO) [Bacillus velezensis strain MJ02]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSRDG
TFHFSVRDNGFICHRCFGKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNELKRVIDLYYEEYSGLYLKSKRFL
DQMESMKHLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=960362 WKI56_RS12195 WP_106067885.1 2452925..2453692(-) (recO) [Bacillus velezensis strain MJ02]
ATGCTGACAAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGAGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTTATGGCAAGAGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGACTTGTTTTTGACGGCATATGCCGCTTTTATCGCTGAACTTACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGAAGGGACTGACCCGGACGTGATCACCTTCA
TCGTTCAGATGAAAATGCTCGGCGTCATGGGACTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCCGGGACGGG
ACGTTTCATTTTTCGGTAAGAGATAATGGTTTTATCTGCCACCGCTGCTTTGGAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCATTAAAACAGGAAA
CCAAAAACGAACTTAAACGGGTTATCGATCTGTATTATGAGGAATATTCAGGGCTTTATTTAAAGTCTAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGCACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

90.588

100

0.906