Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   WKI56_RS10615 Genome accession   NZ_CP149650
Coordinates   2121905..2122513 (+) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus velezensis strain MJ02     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2116905..2127513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKI56_RS10575 (WKI56_10575) - 2117925..2118431 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  WKI56_RS10580 (WKI56_10580) - 2118570..2118983 (+) 414 WP_017418017.1 hypothetical protein -
  WKI56_RS10585 (WKI56_10585) - 2119013..2119480 (-) 468 WP_017418018.1 YppG family protein -
  WKI56_RS10590 (WKI56_10590) - 2119667..2119849 (+) 183 WP_003153532.1 YppF family protein -
  WKI56_RS10595 (WKI56_10595) - 2119888..2120256 (-) 369 WP_017418019.1 YppE family protein -
  WKI56_RS10600 (WKI56_10600) - 2120302..2120547 (-) 246 WP_339078335.1 DUF5446 family protein -
  WKI56_RS10605 (WKI56_10605) sspM 2120753..2120857 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  WKI56_RS10610 (WKI56_10610) - 2120901..2121863 (-) 963 WP_032864187.1 DUF2515 domain-containing protein -
  WKI56_RS10615 (WKI56_10615) recU 2121905..2122513 (+) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  WKI56_RS10620 (WKI56_10620) - 2122552..2125329 (+) 2778 WP_129093732.1 PBP1A family penicillin-binding protein -
  WKI56_RS10625 (WKI56_10625) - 2125408..2125899 (-) 492 WP_012117839.1 YpoC family protein -
  WKI56_RS10630 (WKI56_10630) nth 2125896..2126555 (-) 660 WP_007612187.1 endonuclease III -
  WKI56_RS10635 (WKI56_10635) dnaD 2126574..2127272 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=960351 WKI56_RS10615 WP_003153521.1 2121905..2122513(+) (recU) [Bacillus velezensis strain MJ02]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=960351 WKI56_RS10615 WP_003153521.1 2121905..2122513(+) (recU) [Bacillus velezensis strain MJ02]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896