Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AABA16_RS00200 Genome accession   NZ_AP028610
Coordinates   36300..37070 (+) Length   256 a.a.
NCBI ID   WP_000616164.1    Uniprot ID   Q97TA7
Organism   Streptococcus pneumoniae strain Sep5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 31300..42070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA16_RS00180 (TKY124516_00290) - 33353..33790 (+) 438 WP_000076479.1 CoA-binding protein -
  AABA16_RS00185 - 33831..33956 (+) 126 WP_001849778.1 hypothetical protein -
  AABA16_RS00190 (TKY124516_00300) - 33975..34985 (-) 1011 WP_000009159.1 YeiH family protein -
  AABA16_RS00195 (TKY124516_00320) - 35134..36303 (+) 1170 WP_000366341.1 pyridoxal phosphate-dependent aminotransferase -
  AABA16_RS00200 (TKY124516_00330) recO 36300..37070 (+) 771 WP_000616164.1 DNA repair protein RecO Machinery gene
  AABA16_RS00205 (TKY124516_00340) plsX 37067..38059 (+) 993 WP_000717460.1 phosphate acyltransferase PlsX -
  AABA16_RS00210 (TKY124516_00350) - 38065..38298 (+) 234 WP_000136449.1 acyl carrier protein -
  AABA16_RS00215 (TKY124516_00360) - 38344..38634 (+) 291 Protein_35 IS5/IS1182 family transposase -
  AABA16_RS00220 (TKY124516_00370) blpU 38837..39067 (+) 231 WP_001093071.1 bacteriocin-like peptide BlpU -
  AABA16_RS00225 - 39070..39195 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  AABA16_RS00230 (TKY124516_00380) comA 39782..41935 (+) 2154 WP_000668302.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29787.35 Da        Isoelectric Point: 5.8959

>NTDB_id=96035 AABA16_RS00200 WP_000616164.1 36300..37070(+) (recO) [Streptococcus pneumoniae strain Sep5]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=96035 AABA16_RS00200 WP_000616164.1 36300..37070(+) (recO) [Streptococcus pneumoniae strain Sep5]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGTTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97TA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992

Multiple sequence alignment