Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   WKI54_RS19160 Genome accession   NZ_CP149648
Coordinates   3708887..3709495 (+) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus velezensis strain MJ04     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3703887..3714495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKI54_RS19120 (WKI54_19120) - 3704940..3705446 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  WKI54_RS19125 (WKI54_19125) - 3705585..3705998 (+) 414 WP_007612169.1 hypothetical protein -
  WKI54_RS19130 (WKI54_19130) - 3706028..3706462 (-) 435 WP_252052895.1 YppG family protein -
  WKI54_RS19135 (WKI54_19135) - 3706649..3706831 (+) 183 WP_003153532.1 YppF family protein -
  WKI54_RS19140 (WKI54_19140) - 3706870..3707238 (-) 369 WP_017418019.1 YppE family protein -
  WKI54_RS19145 (WKI54_19145) - 3707284..3707529 (-) 246 WP_014418233.1 DUF5446 family protein -
  WKI54_RS19150 (WKI54_19150) sspM 3707735..3707839 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  WKI54_RS19155 (WKI54_19155) - 3707883..3708845 (-) 963 WP_032864187.1 DUF2515 domain-containing protein -
  WKI54_RS19160 (WKI54_19160) recU 3708887..3709495 (+) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  WKI54_RS19165 (WKI54_19165) - 3709534..3712317 (+) 2784 WP_339075760.1 PBP1A family penicillin-binding protein -
  WKI54_RS19170 (WKI54_19170) - 3712395..3712886 (-) 492 WP_012117839.1 YpoC family protein -
  WKI54_RS19175 (WKI54_19175) nth 3712883..3713542 (-) 660 WP_007612187.1 endonuclease III -
  WKI54_RS19180 (WKI54_19180) dnaD 3713561..3714259 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=960301 WKI54_RS19160 WP_003153521.1 3708887..3709495(+) (recU) [Bacillus velezensis strain MJ04]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=960301 WKI54_RS19160 WP_003153521.1 3708887..3709495(+) (recU) [Bacillus velezensis strain MJ04]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896