Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   WKI54_RS15160 Genome accession   NZ_CP149648
Coordinates   2885608..2885892 (+) Length   94 a.a.
NCBI ID   WP_123117786.1    Uniprot ID   -
Organism   Bacillus velezensis strain MJ04     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2880608..2890892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKI54_RS15140 (WKI54_15140) - 2881854..2882762 (+) 909 WP_025649506.1 ketopantoate reductase family protein -
  WKI54_RS15145 (WKI54_15145) - 2882791..2884023 (-) 1233 WP_007409644.1 aminopeptidase -
  WKI54_RS15150 (WKI54_15150) - 2884124..2884258 (-) 135 WP_003154559.1 protein YkpC -
  WKI54_RS15155 (WKI54_15155) mreBH 2884330..2885337 (-) 1008 WP_014417632.1 cell shape-determining protein MreBH -
  WKI54_RS15160 (WKI54_15160) abrB 2885608..2885892 (+) 285 WP_123117786.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  WKI54_RS15165 (WKI54_15165) - 2886065..2887369 (+) 1305 WP_014417634.1 ATP-binding protein -
  WKI54_RS15170 (WKI54_15170) - 2887371..2888198 (+) 828 WP_014417635.1 gamma-glutamylcyclotransferase family protein -
  WKI54_RS15175 (WKI54_15175) ktrC 2888239..2888904 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  WKI54_RS15180 (WKI54_15180) ade 2889053..2890786 (+) 1734 WP_063636615.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=960295 WKI54_RS15160 WP_123117786.1 2885608..2885892(+) (abrB) [Bacillus velezensis strain MJ04]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYDNGKIILSPEGAK
MLLEEIEEALKGRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=960295 WKI54_RS15160 WP_123117786.1 2885608..2885892(+) (abrB) [Bacillus velezensis strain MJ04]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACCTCCGAAAATCAGGAGTACGACAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGGTAGATCATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(54-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543