Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ACI3MH_RS05600 Genome accession   NZ_CP173533
Coordinates   1129166..1129834 (-) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain 98208     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1124166..1134834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3MH_RS05570 (ACI3MH_05570) rfaQ 1124344..1125402 (-) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -
  ACI3MH_RS05575 (ACI3MH_05575) waaA 1125815..1127092 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  ACI3MH_RS05580 (ACI3MH_05580) coaD 1127100..1127579 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  ACI3MH_RS05585 (ACI3MH_05585) mutM 1127618..1128427 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  ACI3MH_RS05590 (ACI3MH_05590) rpmG 1128525..1128692 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  ACI3MH_RS05595 (ACI3MH_05595) rpmB 1128713..1128949 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  ACI3MH_RS05600 (ACI3MH_05600) radC 1129166..1129834 (-) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  ACI3MH_RS05605 (ACI3MH_05605) coaBC 1130006..1131226 (+) 1221 WP_000050158.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  ACI3MH_RS05610 (ACI3MH_05610) dut 1131204..1131662 (+) 459 WP_000976070.1 dUTP diphosphatase -
  ACI3MH_RS05615 (ACI3MH_05615) slmA 1131769..1132365 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  ACI3MH_RS05620 (ACI3MH_05620) - 1132411..1133370 (-) 960 WP_000340183.1 reverse transcriptase family protein -
  ACI3MH_RS05625 (ACI3MH_05625) pyrE 1133668..1134309 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=960282 ACI3MH_RS05600 WP_001297375.1 1129166..1129834(-) (radC) [Escherichia coli strain 98208]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=960282 ACI3MH_RS05600 WP_001297375.1 1129166..1129834(-) (radC) [Escherichia coli strain 98208]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGTTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGACTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496