Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   WKI54_RS07610 Genome accession   NZ_CP149648
Coordinates   1444487..1444777 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain MJ04     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1439487..1449777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKI54_RS07570 (WKI54_07570) darA 1439505..1439834 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  WKI54_RS07575 (WKI54_07575) - 1439847..1440287 (+) 441 WP_004264730.1 DUF327 family protein -
  WKI54_RS07580 (WKI54_07580) holB 1440299..1441288 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  WKI54_RS07585 (WKI54_07585) ricT 1441291..1442118 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  WKI54_RS07590 (WKI54_07590) yabA 1442133..1442492 (+) 360 WP_017419498.1 replication initiation-control protein YabA -
  WKI54_RS07595 (WKI54_07595) - 1442553..1443296 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  WKI54_RS07600 (WKI54_07600) - 1443283..1443582 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  WKI54_RS07605 (WKI54_07605) rsmI 1443557..1444438 (+) 882 WP_017419497.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  WKI54_RS07610 (WKI54_07610) abrB 1444487..1444777 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  WKI54_RS07615 (WKI54_07615) metG 1445260..1447250 (+) 1991 Protein_1477 methionine--tRNA ligase -
  WKI54_RS07620 (WKI54_07620) - 1447331..1448098 (+) 768 WP_017419495.1 TatD family hydrolase -
  WKI54_RS07625 (WKI54_07625) - 1448233..1449558 (+) 1326 WP_104843579.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=960269 WKI54_RS07610 WP_169510469.1 1444487..1444777(-) (abrB) [Bacillus velezensis strain MJ04]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=960269 WKI54_RS07610 WP_169510469.1 1444487..1444777(-) (abrB) [Bacillus velezensis strain MJ04]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979