Detailed information NTG0960264

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACI3MH_RS00765
• Genome accession: NZ_CP173533
• Coordinates: 136421..137413 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 98208
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 131421..142413

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI3MH_RS00745 (ACI3MH_00745)	otnK	132196..133458 (+)	1263	WP_285929947.1	3-oxo-tetronate kinase	-
ACI3MH_RS00750 (ACI3MH_00750)	ygbL	133455..134093 (+)	639	WP_001278994.1	aldolase	-
ACI3MH_RS00755 (ACI3MH_00755)	ygbM	134098..134874 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
ACI3MH_RS00760 (ACI3MH_00760)	ygbN	134963..136327 (+)	1365	WP_000104456.1	GntP family transporter	-
ACI3MH_RS00765 (ACI3MH_00765)	rpoS	136421..137413 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACI3MH_RS00770 (ACI3MH_00770)	nlpD	137476..138570 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ACI3MH_RS00775 (ACI3MH_00775)	pcm	138755..139381 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACI3MH_RS00780 (ACI3MH_00780)	surE	139375..140136 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACI3MH_RS00785 (ACI3MH_00785)	truD	140117..141166 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACI3MH_RS00790 (ACI3MH_00790)	ispF	141163..141642 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACI3MH_RS00795 (ACI3MH_00795)	ispD	141642..142352 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=960264 ACI3MH_RS00765 WP_000081550.1 136421..137413(-) (rpoS) [Escherichia coli strain 98208]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=960264 ACI3MH_RS00765 WP_000081550.1 136421..137413(-) (rpoS) [Escherichia coli strain 98208]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715